RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 PLEK2Q9NYT0 353 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 TREM2Q9NZC2 230 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 KIAA1456Q9P272 454 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 SLC17A7Q9P2U7 560 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 MARCOQ9UEW3 520 aaPredicted RBP3.25□□□□□ -1.89
USP54-217ENST00000498213 RPUSD1Q9UJJ7 312 aaKnown RBP3.25□□□□□ -1.89
USP54-217ENST00000498213 FAM96BQ9Y3D0 163 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 TRAV36DV7A0A075B6V5 113 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 IGHV3-15A0A0B4J1V0 119 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 TMEM129A0AVI4 362 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 TMEM120BA0PK00 339 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 CLPSL1A2RUU4 121 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 C5orf63A6NC05 138 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 FAM172BPA6NC97 362 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 TRPC5OSA6NMA1 111 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 C17orf51A8MQB3 221 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 E9PBE3 544 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 LYNX1G3V0Z9 82 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 HMGN4O00479 90 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 AP3D1O14617 1153 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 SURF4O15260 269 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 TM9SF1O15321 606 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 AHCYL1O43865 530 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 TYROBPO43914 113 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 SCN2BO60939 215 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 SPAG7O75391 227 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 SERPINB7O75635 380 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 RP2O75695 350 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 SEC14L2O76054 403 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 NDUFA7O95182 113 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 IGHV3-13P01766 116 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 LIPFP07098 398 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 LINC00032P0C843 101 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 LYNX1P0DP58 116 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 IDO1P14902 403 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 ZNF14P17017 642 aaPredicted RBP3.24□□□□□ -1.89
USP54-217ENST00000498213 AHCYP23526 432 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 S100A3P33764 101 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 CHI3L1P36222 383 aaPredicted RBP3.24□□□□□ -1.89
USP54-217ENST00000498213 MDH1P40925 334 aaKnown RBP3.24□□□□□ -1.89
USP54-217ENST00000498213 MRPL19P49406 292 aaKnown RBP3.24□□□□□ -1.89
USP54-217ENST00000498213 SLC18A1P54219 525 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 KLF3P57682 345 aaPredicted RBP3.24□□□□□ -1.89
USP54-217ENST00000498213 LMO4P61968 165 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 GNGT1P63211 74 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 EFNB1P98172 346 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 IL1RL1Q01638 556 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 SPOCK1Q08629 439 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 SNTB2Q13425 540 aaKnown RBP3.24□□□□□ -1.89
USP54-217ENST00000498213 C1DQ13901 141 aaKnown RBP3.24□□□□□ -1.89
USP54-217ENST00000498213 CEACAM7Q14002 265 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 HSP90B2PQ58FF3 399 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 ZNF311Q5JNZ3 666 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 ELFN2Q5R3F8 820 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 GKAP1Q5VSY0 366 aaPredicted RBP3.24□□□□□ -1.89
USP54-217ENST00000498213 SLC27A4Q6P1M0 643 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 TMEM154Q6P9G4 183 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 C16orf87Q6PH81 154 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 LRRN1Q6UXK5 716 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 FOXL2NBQ6ZUU3 175 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 ZNF771Q7L3S4 317 aaPredicted RBP3.24□□□□□ -1.89
USP54-217ENST00000498213 EPHX4Q8IUS5 362 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 SLC30A8Q8IWU4 369 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 C20orf196Q8IYI0 205 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 ANKRD42Q8N9B4 389 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 CCDC63Q8NA47 563 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 C11orf65Q8NCR3 313 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 NPEPL1Q8NDH3 523 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 OR7A2PQ8NGA2 310 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 OR4A15Q8NGL6 344 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 OR13A1Q8NGR1 328 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 OR2T11Q8NH01 316 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 OR6X1Q8NH79 312 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 CLDND2Q8NHS1 167 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 BBS10Q8TAM1 723 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 RASSF5Q8WWW0 418 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 ITFG2Q969R8 447 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 TUBGCP3Q96CW5 907 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 SLC47A1Q96FL8 570 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 AURKBQ96GD4 344 aaPredicted RBP3.24□□□□□ -1.89
USP54-217ENST00000498213 APOPT1Q96IL0 206 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 MPP4Q96JB8 637 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 FAM71F1Q96KD3 344 aaPredicted RBP3.24□□□□□ -1.89
USP54-217ENST00000498213 PANX1Q96RD7 426 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 ZBTB18Q99592 522 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 SEPHS2Q99611 448 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 ARPC5LQ9BPX5 153 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 SLC35A5Q9BS91 424 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 MMP28Q9H239 520 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 SLC38A1Q9H2H9 487 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 OR51I1Q9H343 314 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 RABEP2Q9H5N1 569 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 WDR55Q9H6Y2 383 aaPredicted RBP3.24□□□□□ -1.89
USP54-217ENST00000498213 CRLF2Q9HC73 371 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 HINT3Q9NQE9 182 aaKnown RBP3.24□□□□□ -1.89
USP54-217ENST00000498213 MRPL39Q9NYK5 338 aaKnown RBP3.24□□□□□ -1.89
USP54-217ENST00000498213 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.24□□□□□ -1.89
USP54-217ENST00000498213 ATPIF1Q9UII2 106 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 NUP50Q9UKX7 468 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 MKLN1Q9UL63 735 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms