RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 MBOAT4Q96T53 435 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 TAS2R5Q9NYW4 299 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 KCNG2Q9UJ96 466 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 IGHV1OR21-1A0A087WYE8 117 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 TSPAN12O95859 305 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 FOLR1P15328 257 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 SPNP16150 400 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 ELK1P19419 428 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 EGR3Q06889 387 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 HES3Q5TGS1 186 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 DUSP21Q9H596 190 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 A0A0A6YYJ9 748 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 FJX1Q86VR8 437 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 OR6K3Q8NGY3 331 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 GPR119Q8TDV5 335 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 YIPF5Q969M3 257 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 CPEP16870 476 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 CALCRP30988 508 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 NXPH1P58417 271 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 ZNF266Q14584 549 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 CTU2Q2VPK5 515 aaKnown RBP11.89□□□□□ -0.51
PTPRF-215ENST00000496447 ELFN2Q5R3F8 820 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 COL13A1Q5TAT6 717 aaPredicted RBP11.89□□□□□ -0.51
PTPRF-215ENST00000496447 OR8G2PQ6IF36 304 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 GCNT2Q8N0V5 402 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 SLC35E1Q96K37 410 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 S1PR3Q99500 378 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 SARGQ9BW04 601 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 TRABD2BA6NFA1 517 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 K7EQM0 130 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 OR2F2O95006 317 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 CPN1P15169 458 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 TBPP20226 339 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 MEOX1P50221 254 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 CCR6P51684 374 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 OR2F1Q13607 317 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 FBXL14Q8N1E6 418 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 FAM26EQ8N5C1 309 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 OR2I1PQ8NGU4 316 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 TECTBQ96PL2 329 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 ALKBH3Q96Q83 286 aaPredicted RBP11.88□□□□□ -0.51
PTPRF-215ENST00000496447 SLC25A21Q9BQT8 299 aaPredicted RBP11.88□□□□□ -0.51
PTPRF-215ENST00000496447 PBOV1Q9GZY1 135 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 PPP1R3CQ9UQK1 317 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 TRAPPC4Q9Y296 219 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 LAMB1P07942 1786 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 TNFSF14O43557 240 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 PMS2P2O95744 297 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 C19orf57Q0VDD7 668 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 CEACAM16Q2WEN9 425 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 CDH26Q8IXH8 852 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 SEH1LQ96EE3 360 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 GINS3Q9BRX5 216 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 JAM3Q9BX67 310 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 VN1R1Q9GZP7 353 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 CRISPLD2Q9H0B8 497 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 R4GMQ9 66 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 IGHV5-51A0A0C4DH38 117 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 HLA-DOBP13765 273 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 DOC2BQ14184 412 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 PCK2Q16822 640 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 OR1J1Q8NGS3 322 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 MRGPRX3Q96LB0 322 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 ARV1Q9H2C2 271 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 PNPP00491 289 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 AARDQ4LEZ3 155 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 SOWAHCQ53LP3 525 aaPredicted RBP11.88□□□□□ -0.51
PTPRF-215ENST00000496447 KIRREL2Q6UWL6 708 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 OR51A4Q8NGJ6 313 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 GNG13Q9P2W3 67 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 ACSM4P0C7M7 580 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 RPS27P42677 84 aaKnown RBP11.88□□□□□ -0.51
PTPRF-215ENST00000496447 HAAOP46952 286 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 ZNF574Q6ZN55 896 aaPredicted RBP11.88□□□□□ -0.51
PTPRF-215ENST00000496447 TPPP3Q9BW30 176 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 SLC23A1Q9UHI7 598 aa11.88□□□□□ -0.51
PTPRF-215ENST00000496447 GDF2Q9UK05 429 aaPredicted RBP11.88□□□□□ -0.51
PTPRF-215ENST00000496447 POU3F3P20264 500 aaPredicted RBP11.87□□□□□ -0.51
PTPRF-215ENST00000496447 SSPNQ14714 243 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 UQCC3Q6UW78 93 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 NOXO1Q8NFA2 376 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 OR10R2Q8NGX6 335 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 GABARAPL1Q9H0R8 117 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 POFUT1Q9H488 388 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 IL20Q9NYY1 176 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 COL22A1Q8NFW1 1626 aaPredicted RBP11.87□□□□□ -0.51
PTPRF-215ENST00000496447 CD1EP15812 388 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 NME2P22392 152 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 PRPH2P23942 346 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 PAX6P26367 422 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 RAB1AP62820 205 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 SRSF5Q13243 272 aaKnown RBP11.87□□□□□ -0.51
PTPRF-215ENST00000496447 GABRG1Q8N1C3 465 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 SLC38A9Q8NBW4 561 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 GPBAR1Q8TDU6 330 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 MRPS24Q96EL2 167 aaKnown RBP11.87□□□□□ -0.51
PTPRF-215ENST00000496447 SAT2Q96F10 170 aaPredicted RBP11.87□□□□□ -0.51
PTPRF-215ENST00000496447 SPACA5Q96QH8 159 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 NIPSNAP3BQ9BS92 247 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 DOCK2Q92608 1830 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms