RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 LPCAT4Q643R3 524 aa13.84□□□□□ -0.19
MSH5-SAPCD1-206ENST00000491552 DEGS2Q6QHC5 323 aa13.84□□□□□ -0.19
MSH5-SAPCD1-206ENST00000491552 FAM57BQ71RH2 274 aa13.84□□□□□ -0.19
MSH5-SAPCD1-206ENST00000491552 PRSS45Q7RTY3 260 aa13.84□□□□□ -0.19
MSH5-SAPCD1-206ENST00000491552 GALNT4Q8N4A0 578 aa13.84□□□□□ -0.19
MSH5-SAPCD1-206ENST00000491552 ZNF540Q8NDQ6 660 aa13.84□□□□□ -0.19
MSH5-SAPCD1-206ENST00000491552 BHLHE23Q8NDY6 225 aa13.84□□□□□ -0.19
MSH5-SAPCD1-206ENST00000491552 OR2Z1Q8NG97 314 aa13.84□□□□□ -0.19
MSH5-SAPCD1-206ENST00000491552 YIPF5Q969M3 257 aa13.84□□□□□ -0.19
MSH5-SAPCD1-206ENST00000491552 UBE2FQ969M7 185 aa13.84□□□□□ -0.19
MSH5-SAPCD1-206ENST00000491552 ELMOD3Q96FG2 381 aa13.84□□□□□ -0.19
MSH5-SAPCD1-206ENST00000491552 SMR3AQ99954 134 aa13.84□□□□□ -0.19
MSH5-SAPCD1-206ENST00000491552 TTTY10Q9BZA0 68 aa13.84□□□□□ -0.19
MSH5-SAPCD1-206ENST00000491552 BPESC1Q9GZL8 116 aa13.84□□□□□ -0.19
MSH5-SAPCD1-206ENST00000491552 EGLN1Q9GZT9 426 aa13.84□□□□□ -0.19
MSH5-SAPCD1-206ENST00000491552 FAM118AQ9NWS6 357 aa13.84□□□□□ -0.19
MSH5-SAPCD1-206ENST00000491552 CLN6Q9NWW5 311 aa13.84□□□□□ -0.19
MSH5-SAPCD1-206ENST00000491552 SMPD3Q9NY59 655 aaPredicted RBP13.84□□□□□ -0.19
MSH5-SAPCD1-206ENST00000491552 MED13LQ71F56 2210 aa13.83□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 CHD3Q12873 2000 aaKnown RBP13.83□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 IGHV1-69-2A0A0G2JMI3 117 aa13.83□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 LOC100130705A0A1B0GUX0 176 aa13.83□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 PSMD9O00233 223 aa13.83□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 RP2O75695 350 aa13.83□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 USF1P22415 310 aaPredicted RBP13.83□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 PSMA6P60900 246 aaKnown RBP13.83□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 RIN1Q13671 783 aa13.83□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 SLC25A30Q5SVS4 291 aa13.83□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 MEDAGQ5VYS4 303 aa13.83□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 RFLNBQ8N5W9 214 aa13.83□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 PACRGLQ8N7B6 248 aa13.83□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 OR52H1Q8NGJ2 320 aa13.83□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 OR13G1Q8NGZ3 307 aa13.83□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 PGAM5Q96HS1 289 aa13.83□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 OR8B4Q96RC9 309 aa13.83□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 SLC30A2Q9BRI3 323 aa13.83□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 REPIN1Q9BWE0 567 aaKnown RBP13.83□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 MROQ9BYG7 248 aa13.83□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 OR10A2Q9H208 303 aa13.83□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 GSX1Q9H4S2 264 aaPredicted RBP13.83□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 BRD7Q9NPI1 651 aa13.83□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 ZNF275Q9NSD4 429 aaPredicted RBP13.83□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 GGT3PA6NGU5 568 aa13.82□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 PRR32B1ATL7 298 aa13.82□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 DLGAP1O14490 977 aa13.82□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 MPZL2O60487 215 aa13.82□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 CDC14BO60729 498 aa13.82□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 LILRA1O75019 489 aa13.82□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 ENTPD6O75354 484 aa13.82□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 ZNF254O75437 659 aa13.82□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 APOL3O95236 402 aa13.82□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 CRYBB2P43320 205 aa13.82□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 CXCR4P61073 352 aa13.82□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 ROM1Q03395 351 aa13.82□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 OCLNQ16625 522 aa13.82□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 TIGD6Q17RP2 521 aa13.82□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 ZNF322Q6U7Q0 402 aaPredicted RBP13.82□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 CLEC9AQ6UXN8 241 aa13.82□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 ENTHD1Q8IYW4 607 aa13.82□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 ZNF679Q8IYX0 411 aa13.82□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 ZNF555Q8NEP9 628 aa13.82□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 SPRYD4Q8WW59 207 aaPredicted RBP13.82□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 SPSB4Q96A44 273 aa13.82□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 REEP6Q96HR9 211 aa13.82□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 DCLRE1BQ9H816 532 aa13.82□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 IKZF2Q9UKS7 526 aa13.82□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.82□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 FLNAP21333 2647 aaKnown RBP13.81□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 IGHV4-61A0A0C4DH41 118 aa13.81□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 CD300LBA8K4G0 201 aa13.81□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 CASQ2O14958 399 aaPredicted RBP13.81□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 SLC16A6O15403 523 aa13.81□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 OR2T7P0C7T2 308 aa13.81□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 GABRB1P18505 474 aa13.81□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 CFL1P23528 166 aaKnown RBP13.81□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 DCTDP32321 178 aa13.81□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 ATP6V1E1P36543 226 aa13.81□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 GPR6P46095 362 aaPredicted RBP13.81□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 RIDAP52758 137 aaKnown RBP13.81□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 EGR3Q06889 387 aa13.81□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 HFEQ30201 348 aa13.81□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 GFOD2Q3B7J2 385 aa13.81□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 OGFRL1Q5TC84 451 aaPredicted RBP13.81□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 OR10AD1Q8NGE0 317 aa13.81□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 OR2T27Q8NH04 317 aa13.81□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 TBX5Q99593 518 aa13.81□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 TMEM100Q9NV29 134 aa13.81□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 ZNF319Q9P2F9 582 aa13.81□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 IL19Q9UHD0 177 aa13.81□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 CR1P17927 2039 aa13.81□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 A0A1B0GWJ7 208 aa13.8□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 SNTNA6NMZ2 147 aa13.8□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 H0YL77 283 aa13.8□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 MLNRO43193 412 aa13.8□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 PPIHO43447 177 aaKnown RBP13.8□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 LY6G6DO95868 133 aa13.8□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 HEXAP06865 529 aa13.8□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 TNFRSF1AP19438 455 aa13.8□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 MTNR1AP48039 350 aa13.8□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 TMEM33P57088 247 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms