RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 CROCCP3Q8IVE0 287 aa18.82■□□□□ 0.6
SMC4-221ENST00000489573 AP3S1Q92572 193 aa18.82■□□□□ 0.6
SMC4-221ENST00000489573 DMRTA2Q96SC8 542 aa18.82■□□□□ 0.6
SMC4-221ENST00000489573 ZNF275Q9NSD4 429 aaPredicted RBP18.82■□□□□ 0.6
SMC4-221ENST00000489573 ZGRF1Q86YA3 2104 aa18.82■□□□□ 0.6
SMC4-221ENST00000489573 INTS1Q8N201 2190 aaKnown RBP18.82■□□□□ 0.6
SMC4-221ENST00000489573 A0A0G2JK05 382 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 FSTP19883 344 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 APLNRP35414 380 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 CA7P43166 264 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 OR10A3P58181 314 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 STAC2Q6ZMT1 411 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 MRGPRGQ86SM5 289 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 WDR31Q8NA23 367 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 OR6Q1Q8NGQ2 317 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 FAM71F1Q96KD3 344 aaPredicted RBP18.81■□□□□ 0.6
SMC4-221ENST00000489573 POM121L2Q96KW2 1035 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 LYZL4Q96KX0 146 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 ZNF75AQ96N20 296 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 CXorf56Q9H5V9 222 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 SMURF1Q9HCE7 757 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 OBP2BQ9NPH6 170 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 CRNNQ9UBG3 495 aaPredicted RBP18.81■□□□□ 0.6
SMC4-221ENST00000489573 TRAV8-7A0A075B6U6 113 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 A0A1W2PR80 420 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 C5orf49A4QMS7 147 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 EEF1E1-BLOC1S5C9J1V9 151 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 EEF1E1O43324 174 aaKnown RBP18.81■□□□□ 0.6
SMC4-221ENST00000489573 LMX1BO60663 402 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 SERPINA5P05154 406 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 ZNF12P17014 697 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 CFL1P23528 166 aaKnown RBP18.81■□□□□ 0.6
SMC4-221ENST00000489573 SFXN4Q6P4A7 337 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 LRRTM1Q86UE6 522 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 PLPP7Q8NBV4 271 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 CCDC54Q8NEL0 328 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 RND1Q92730 232 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 SOX7Q9BT81 388 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 C1QTNF5Q9BXJ0 243 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 CKLFQ9UBR5 152 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 FOXJ3Q9UPW0 622 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 MEMO1Q9Y316 297 aa18.81■□□□□ 0.6
SMC4-221ENST00000489573 AK6Q9Y3D8 172 aaKnown RBP18.81■□□□□ 0.6
SMC4-221ENST00000489573 ANKRD61A6NGH8 418 aa18.8■□□□□ 0.6
SMC4-221ENST00000489573 NOTOA8MTQ0 251 aa18.8■□□□□ 0.6
SMC4-221ENST00000489573 CCNOP22674 350 aa18.8■□□□□ 0.6
SMC4-221ENST00000489573 IL32P24001 234 aa18.8■□□□□ 0.6
SMC4-221ENST00000489573 BMXP51813 675 aa18.8■□□□□ 0.6
SMC4-221ENST00000489573 CEP78Q5JTW2 689 aa18.8■□□□□ 0.6
SMC4-221ENST00000489573 PARP16Q8N5Y8 322 aa18.8■□□□□ 0.6
SMC4-221ENST00000489573 OR1J2Q8NGS2 313 aa18.8■□□□□ 0.6
SMC4-221ENST00000489573 MS4A3Q96HJ5 214 aa18.8■□□□□ 0.6
SMC4-221ENST00000489573 TAS2R4Q9NYW5 299 aa18.8■□□□□ 0.6
SMC4-221ENST00000489573 A8MXE2 369 aa18.79■□□□□ 0.6
SMC4-221ENST00000489573 CCL2P13500 99 aa18.79■□□□□ 0.6
SMC4-221ENST00000489573 ZNF14P17017 642 aaPredicted RBP18.79■□□□□ 0.6
SMC4-221ENST00000489573 ZNF20P17024 532 aa18.79■□□□□ 0.6
SMC4-221ENST00000489573 IGFBP3P17936 291 aaPredicted RBP18.79■□□□□ 0.6
SMC4-221ENST00000489573 PSMB1P20618 241 aaKnown RBP18.79■□□□□ 0.6
SMC4-221ENST00000489573 ASPHD2Q6ICH7 369 aa18.79■□□□□ 0.6
SMC4-221ENST00000489573 COLCA1Q6ZS62 124 aa18.79■□□□□ 0.6
SMC4-221ENST00000489573 SLC30A7Q8NEW0 376 aa18.79■□□□□ 0.6
SMC4-221ENST00000489573 OR14K1Q8NGZ2 314 aa18.79■□□□□ 0.6
SMC4-221ENST00000489573 SGK3Q96BR1 496 aa18.79■□□□□ 0.6
SMC4-221ENST00000489573 FGGYQ96C11 551 aa18.79■□□□□ 0.6
SMC4-221ENST00000489573 RGCCQ9H4X1 137 aa18.79■□□□□ 0.6
SMC4-221ENST00000489573 ZNF391Q9UJN7 358 aa18.79■□□□□ 0.6
SMC4-221ENST00000489573 AMDHD2Q9Y303 409 aa18.79■□□□□ 0.6
SMC4-221ENST00000489573 PEX16Q9Y5Y5 336 aa18.79■□□□□ 0.6
SMC4-221ENST00000489573 SMG1Q96Q15 3661 aaKnown RBP18.79■□□□□ 0.6
SMC4-221ENST00000489573 OR5H1A6NKK0 313 aa18.78■□□□□ 0.6
SMC4-221ENST00000489573 XRCC2O43543 280 aa18.78■□□□□ 0.6
SMC4-221ENST00000489573 DHRS3O75911 302 aa18.78■□□□□ 0.6
SMC4-221ENST00000489573 MAS1P04201 325 aa18.78■□□□□ 0.6
SMC4-221ENST00000489573 CBR1P16152 277 aa18.78■□□□□ 0.6
SMC4-221ENST00000489573 MOGQ16653 247 aa18.78■□□□□ 0.6
SMC4-221ENST00000489573 SLC25A35Q3KQZ1 300 aa18.78■□□□□ 0.6
SMC4-221ENST00000489573 GLYATL3Q5SZD4 288 aa18.78■□□□□ 0.6
SMC4-221ENST00000489573 IDNKQ5T6J7 187 aa18.78■□□□□ 0.6
SMC4-221ENST00000489573 Q6ZSR3 168 aa18.78■□□□□ 0.6
SMC4-221ENST00000489573 ADAT3Q96EY9 351 aaPredicted RBP18.78■□□□□ 0.6
SMC4-221ENST00000489573 REEP6Q96HR9 211 aa18.78■□□□□ 0.6
SMC4-221ENST00000489573 GFI1Q99684 422 aa18.78■□□□□ 0.6
SMC4-221ENST00000489573 ZCCHC4Q9H5U6 513 aa18.78■□□□□ 0.6
SMC4-221ENST00000489573 PLEKHA1Q9HB21 404 aa18.78■□□□□ 0.6
SMC4-221ENST00000489573 OSGIN2Q9Y236 505 aa18.78■□□□□ 0.6
SMC4-221ENST00000489573 V9GYS6 101 aa18.78■□□□□ 0.6
SMC4-221ENST00000489573 SHANK1Q9Y566 2161 aa18.77■□□□□ 0.6
SMC4-221ENST00000489573 ANXA2P2A6NMY6 339 aa18.77■□□□□ 0.6
SMC4-221ENST00000489573 MTRF1O75570 445 aaKnown RBP18.77■□□□□ 0.6
SMC4-221ENST00000489573 ADRA2CP18825 462 aa18.77■□□□□ 0.6
SMC4-221ENST00000489573 PAX7P23759 505 aa18.77■□□□□ 0.6
SMC4-221ENST00000489573 S100A5P33763 92 aa18.77■□□□□ 0.6
SMC4-221ENST00000489573 IDH3GP51553 393 aaPredicted RBP18.77■□□□□ 0.6
SMC4-221ENST00000489573 TBC1D28Q2M2D7 210 aa18.77■□□□□ 0.6
SMC4-221ENST00000489573 SERPINA12Q8IW75 414 aa18.77■□□□□ 0.6
SMC4-221ENST00000489573 RELL2Q8NC24 303 aaPredicted RBP18.77■□□□□ 0.6
SMC4-221ENST00000489573 OR2AE1Q8NHA4 323 aa18.77■□□□□ 0.6
SMC4-221ENST00000489573 APOBEC3DQ96AK3 386 aaPredicted RBP18.77■□□□□ 0.6
SMC4-221ENST00000489573 KCTD12Q96CX2 325 aaKnown RBP18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms