RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 NDUFS7O75251 213 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 IGHV3-13P01766 116 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 TFP02787 698 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 SCG5P05408 212 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 KRT8P05787 483 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 DBHP09172 617 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 RAC2P15153 192 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 FOSL1P15407 271 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 ACHEP22303 614 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 USF1P22415 310 aaPredicted RBP6.89□□□□□ -1.31
USP40-216ENST00000485943 SRP9P49458 86 aaKnown RBP6.89□□□□□ -1.31
USP40-216ENST00000485943 CHN2P52757 468 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 IL5RAQ01344 420 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 TNK1Q13470 666 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 RCN1Q15293 331 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 OR8G1Q15617 311 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 LRRC36Q1X8D7 754 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 NXNL2Q5VZ03 156 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 MBNL2Q5VZF2 373 aaKnown RBP6.89□□□□□ -1.31
USP40-216ENST00000485943 KDM4DQ6B0I6 523 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 C11orf71Q6IPW1 123 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 RFPL4BQ6ZWI9 263 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 USP51Q70EK9 711 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 FAM57BQ71RH2 274 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 MEPCEQ7L2J0 689 aaKnown RBP6.89□□□□□ -1.31
USP40-216ENST00000485943 SLC16A9Q7RTY1 509 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 THAP5Q7Z6K1 395 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 LRP11Q86VZ4 500 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 ZNF101Q8IZC7 436 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 C1orf87Q8N0U7 546 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 ZCCHC24Q8N2G6 241 aaKnown RBP6.89□□□□□ -1.31
USP40-216ENST00000485943 CBR4Q8N4T8 237 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 OR10H4Q8NGA5 316 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 OR51G2Q8NGK0 314 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 OR8J1Q8NGP2 316 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 OR11L1Q8NGX0 322 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 OR13G1Q8NGZ3 307 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 CYGBQ8WWM9 190 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 CCL17Q92583 94 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 RAB1CQ92928 201 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 MNTQ99583 582 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 DOK1Q99704 481 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 NARFLQ9H6Q4 476 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 NIPAL2Q9H841 368 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 NTN4Q9HB63 628 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 C8orf4Q9NR00 106 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 TMEM100Q9NV29 134 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 CHCHD3Q9NX63 227 aaKnown RBP6.89□□□□□ -1.31
USP40-216ENST00000485943 PURGQ9UJV8 347 aaKnown RBP6.89□□□□□ -1.31
USP40-216ENST00000485943 POLQO75417 2590 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 MYO9AB2RTY4 2548 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 hCG_1807616A0A1W2PRN6 198 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 SELENOFO60613 162 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 LY6HO94772 140 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 NGFP01138 241 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 SLC2A1P11166 492 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 ZNF250P15622 560 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 PAX1P15863 534 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 HNF1AP20823 631 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 WNT5AP41221 380 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 TESK1Q15569 626 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 MEDAGQ5VYS4 303 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 OR2T2Q6IF00 324 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 KCTD8Q6ZWB6 473 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 SLC35F2Q8IXU6 374 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 TIGD4Q8IY51 512 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 YIPF7Q8N8F6 280 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 SETD9Q8NE22 299 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 OR52H1Q8NGJ2 320 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 ST7LQ8TDW4 575 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 TRUB1Q8WWH5 349 aaKnown RBP6.88□□□□□ -1.31
USP40-216ENST00000485943 RAB39BQ96DA2 213 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 MARS2Q96GW9 593 aaKnown RBP6.88□□□□□ -1.31
USP40-216ENST00000485943 TBX5Q99593 518 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 GAL3ST1Q99999 423 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 ABHD6Q9BV23 337 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 TTTY10Q9BZA0 68 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 YIPF3Q9GZM5 350 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 SLC22A4Q9H015 551 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 CHODLQ9H9P2 273 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 PLEKHA1Q9HB21 404 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 MSL2Q9HCI7 577 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 YAE1D1Q9NRH1 226 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 MRPL22Q9NWU5 206 aaKnown RBP6.88□□□□□ -1.31
USP40-216ENST00000485943 UBAP1Q9NZ09 502 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 WARS2Q9UGM6 360 aaKnown RBP6.88□□□□□ -1.31
USP40-216ENST00000485943 PFDN2Q9UHV9 154 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 STARD10Q9Y365 291 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 PCDHGB1Q9Y5G3 927 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 MED13LQ71F56 2210 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 ARFGEF3Q5TH69 2177 aa6.88□□□□□ -1.31
USP40-216ENST00000485943 TACC2O95359 2948 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 TMEM269A0A1B0GVZ9 245 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 DAPL1A0PJW8 107 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 ZAR1LA6NP61 321 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 ANKRD65E5RJM6 399 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 LOC110117498-PIK3R3F6TDL0 507 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 M0R129 80 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 PSMD9O00233 223 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 SHOXO15266 292 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms