RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 PHF7Q9BWX1 381 aaPredicted RBP11.87□□□□□ -0.51
USP40-214ENST00000483519 PRTFDC1Q9NRG1 225 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 MIOXQ9UGB7 285 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 CACFD1Q9UGQ2 172 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 OR52A1Q9UKL2 312 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 RHBDD3Q9Y3P4 386 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 TIMM10BQ9Y5J6 103 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 FLVCR1Q9Y5Y0 555 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 BLACEA4D250 179 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 POM121BA6NF01 834 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 CLDN4O14493 209 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 GATCO43716 136 aaKnown RBP11.86□□□□□ -0.51
USP40-214ENST00000483519 PLGP00747 810 aaPredicted RBP11.86□□□□□ -0.51
USP40-214ENST00000483519 BGLAPP02818 100 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 HOXC4P09017 264 aaPredicted RBP11.86□□□□□ -0.51
USP40-214ENST00000483519 GNB3P16520 340 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 NME2P22392 152 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 CXCR1P25024 350 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 GALNSP34059 522 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 PMELP40967 661 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 IGLV3-21P80748 117 aaPredicted RBP11.86□□□□□ -0.51
USP40-214ENST00000483519 FUT7Q11130 342 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 UNC119Q13432 240 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 ACKR1Q16570 336 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 BTNL8Q6UX41 500 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 ARRDC1Q8N5I2 433 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 ZNF519Q8TB69 540 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 ROBO4Q8WZ75 1007 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 TSACCQ96A04 125 aaPredicted RBP11.86□□□□□ -0.51
USP40-214ENST00000483519 WDR92Q96MX6 357 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 SCGB3A2Q96PL1 93 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 VSX1Q9NZR4 365 aaPredicted RBP11.86□□□□□ -0.51
USP40-214ENST00000483519 TRAV36DV7A0A075B6V5 113 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 SRSF10O75494 262 aaKnown RBP11.86□□□□□ -0.51
USP40-214ENST00000483519 ADAP1O75689 374 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 SERPINA5P05154 406 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 HSD11B1P28845 292 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 GJA4P35212 333 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 RABIFP47224 123 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 SLC6A8P48029 635 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 INSM1Q01101 510 aaPredicted RBP11.86□□□□□ -0.51
USP40-214ENST00000483519 GLO1Q04760 184 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 SRSF5Q13243 272 aaKnown RBP11.86□□□□□ -0.51
USP40-214ENST00000483519 NFATC4Q14934 902 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 SLC22A24Q8N4F4 322 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 KDF1Q8NAX2 398 aaPredicted RBP11.86□□□□□ -0.51
USP40-214ENST00000483519 TCTEX1D2Q8WW35 142 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 AKR1E2Q96JD6 320 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 TUBA4BQ9H853 241 aa11.86□□□□□ -0.51
USP40-214ENST00000483519 LAMA3Q16787 3333 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 C2orf16Q68DN1 1984 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 AGPAT2O15120 278 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 CTLA4P16410 223 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 CSNK1EP49674 416 aaKnown RBP11.85□□□□□ -0.51
USP40-214ENST00000483519 SLC9A3R2Q15599 337 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 SGCBQ16585 318 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 CLEC18BQ6UXF7 455 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 ZNF600Q6ZNG1 722 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 OOSP2Q86WS3 158 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 ELSPBP1Q96BH3 223 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 C2orf50Q96LR7 162 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 NAA11Q9BSU3 229 aaPredicted RBP11.85□□□□□ -0.51
USP40-214ENST00000483519 ADAM19Q9H013 955 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 METTL8Q9H825 291 aaKnown RBP11.85□□□□□ -0.51
USP40-214ENST00000483519 HRASLS2Q9NWW9 162 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 GHRLQ9UBU3 117 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 GPR132Q9UNW8 380 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 MEMO1Q9Y316 297 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 A0A0A6YYC8 382 aaPredicted RBP11.85□□□□□ -0.51
USP40-214ENST00000483519 FAM157AC9JC47 383 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 I3L1I5 382 aaPredicted RBP11.85□□□□□ -0.51
USP40-214ENST00000483519 K7EQS6 105 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 TO15178 435 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 MT-ATP6P00846 226 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 GLP1RP43220 463 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 SQSTM1Q13501 440 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 KIF26BQ2KJY2 2108 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 VAX1Q5SQQ9 334 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 RPL7L1Q6DKI1 246 aaKnown RBP11.85□□□□□ -0.51
USP40-214ENST00000483519 MARCH3Q86UD3 253 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 ZNF615Q8N8J6 731 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 TAAR9Q96RI9 348 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 TXNIPQ9H3M7 391 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 C5orf66Q9H5L9 145 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 FBRSQ9HAH7 460 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 G6PC2Q9NQR9 355 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 PRDM6Q9NQX0 595 aa11.85□□□□□ -0.51
USP40-214ENST00000483519 CEACAM18A8MTB9 384 aa11.84□□□□□ -0.51
USP40-214ENST00000483519 UTS2O95399 124 aa11.84□□□□□ -0.51
USP40-214ENST00000483519 APODP05090 189 aa11.84□□□□□ -0.51
USP40-214ENST00000483519 VSIG8P0DPA2 414 aa11.84□□□□□ -0.51
USP40-214ENST00000483519 CRABP1P29762 137 aa11.84□□□□□ -0.51
USP40-214ENST00000483519 RAB32Q13637 225 aa11.84□□□□□ -0.51
USP40-214ENST00000483519 RUNX3Q13761 415 aa11.84□□□□□ -0.51
USP40-214ENST00000483519 EBPQ15125 230 aaKnown RBP11.84□□□□□ -0.51
USP40-214ENST00000483519 MAJINQ3KP22 176 aa11.84□□□□□ -0.51
USP40-214ENST00000483519 KDM8Q8N371 416 aa11.84□□□□□ -0.51
USP40-214ENST00000483519 FAM160A2Q8N612 972 aaPredicted RBP11.84□□□□□ -0.51
USP40-214ENST00000483519 ADAMTS18Q8TE60 1221 aa11.84□□□□□ -0.51
USP40-214ENST00000483519 TMEM230Q96A57 120 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms