RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 STMN3Q9NZ72 180 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 CES1P1Q9UKY3 287 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 OR51B2Q9Y5P1 312 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 DNASE2O00115 360 aaPredicted RBP3.38□□□□□ -1.87
UPF3B-203ENST00000478840 NMT2O60551 498 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 CTNSO60931 367 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 TRAPPC6AO75865 159 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 SEMA3DO95025 777 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 IGFBP3P17936 291 aaPredicted RBP3.38□□□□□ -1.87
UPF3B-203ENST00000478840 HTR1DP28221 377 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 RBM34P42696 430 aaKnown RBP3.38□□□□□ -1.87
UPF3B-203ENST00000478840 CD151P48509 253 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 CCR6P51684 374 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 SLC35B1P78383 322 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 DGCR6Q14129 220 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 ZNF266Q14584 549 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 IRF4Q15306 451 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 C6orf183Q5T699 404 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 ZNF530Q6P9A1 599 aaPredicted RBP3.38□□□□□ -1.87
UPF3B-203ENST00000478840 NCCRP1Q6ZVX7 275 aaPredicted RBP3.38□□□□□ -1.87
UPF3B-203ENST00000478840 SNX20Q7Z614 316 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 C12orf56Q8IXR9 622 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 PRSS58Q8IYP2 241 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 SYS1Q8N2H4 156 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 WDR31Q8NA23 367 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 LILRB4Q8NHJ6 448 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 HAUS1Q96CS2 278 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 CENPNQ96H22 339 aaPredicted RBP3.38□□□□□ -1.87
UPF3B-203ENST00000478840 RNF170Q96K19 258 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 ZIM3Q96PE6 472 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 OR2A5Q96R48 311 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 TEAD3Q99594 435 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 SLIRPQ9GZT3 109 aaKnown RBP3.38□□□□□ -1.87
UPF3B-203ENST00000478840 CHRNA10Q9GZZ6 450 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 IFI27L2Q9H2X8 130 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 SYNDIG1Q9H7V2 258 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 EDA2RQ9HAV5 297 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 ZNF302Q9NR11 478 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 CFAP45Q9UL16 551 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 CDC42BPBQ9Y5S2 1711 aa3.38□□□□□ -1.87
UPF3B-203ENST00000478840 CROCCQ5TZA2 2017 aa3.37□□□□□ -1.87
UPF3B-203ENST00000478840 A0A0A6YYD5 115 aa3.37□□□□□ -1.87
UPF3B-203ENST00000478840 IGKV1-8A0A0C4DH67 115 aa3.37□□□□□ -1.87
UPF3B-203ENST00000478840 LINC00854A0A1B0GVQ3 168 aa3.37□□□□□ -1.87
UPF3B-203ENST00000478840 A0A1B0GVX0 72 aa3.37□□□□□ -1.87
UPF3B-203ENST00000478840 PRMT5O14744 637 aaPredicted RBP3.37□□□□□ -1.87
UPF3B-203ENST00000478840 PSMC3P17980 439 aa3.37□□□□□ -1.87
UPF3B-203ENST00000478840 TCP1P17987 556 aaKnown RBP3.37□□□□□ -1.87
UPF3B-203ENST00000478840 MDKP21741 143 aaPredicted RBP3.37□□□□□ -1.87
UPF3B-203ENST00000478840 LOXP28300 417 aaPredicted RBP3.37□□□□□ -1.87
UPF3B-203ENST00000478840 HTR2CP28335 458 aa3.37□□□□□ -1.87
UPF3B-203ENST00000478840 TAS2R60P59551 318 aa3.37□□□□□ -1.87
UPF3B-203ENST00000478840 KDSRQ06136 332 aa3.37□□□□□ -1.87
UPF3B-203ENST00000478840 APOBEC3HQ6NTF7 200 aaKnown RBP3.37□□□□□ -1.87
UPF3B-203ENST00000478840 NDUFAF7Q7L592 441 aa3.37□□□□□ -1.87
UPF3B-203ENST00000478840 RAB43Q86YS6 212 aa3.37□□□□□ -1.87
UPF3B-203ENST00000478840 RBM45Q8IUH3 476 aaKnown RBP3.37□□□□□ -1.87
UPF3B-203ENST00000478840 ARIH2OSQ8N7S6 290 aa3.37□□□□□ -1.87
UPF3B-203ENST00000478840 OR10Z1Q8NGY1 313 aa3.37□□□□□ -1.87
UPF3B-203ENST00000478840 OR6N2Q8NGY6 317 aa3.37□□□□□ -1.87
UPF3B-203ENST00000478840 PIFOQ8TCI5 191 aa3.37□□□□□ -1.87
UPF3B-203ENST00000478840 CEP170P1Q96L14 293 aa3.37□□□□□ -1.87
UPF3B-203ENST00000478840 FAM19A4Q96LR4 140 aa3.37□□□□□ -1.87
UPF3B-203ENST00000478840 SAMD10Q9BYL1 202 aa3.37□□□□□ -1.87
UPF3B-203ENST00000478840 SYT4Q9H2B2 425 aa3.37□□□□□ -1.87
UPF3B-203ENST00000478840 MYOZ1Q9NP98 299 aaPredicted RBP3.37□□□□□ -1.87
UPF3B-203ENST00000478840 LHX9Q9NQ69 397 aa3.37□□□□□ -1.87
UPF3B-203ENST00000478840 RRAGDQ9NQL2 400 aaPredicted RBP3.37□□□□□ -1.87
UPF3B-203ENST00000478840 ZNF331Q9NQX6 463 aaPredicted RBP3.37□□□□□ -1.87
UPF3B-203ENST00000478840 CTSFQ9UBX1 484 aa3.37□□□□□ -1.87
UPF3B-203ENST00000478840 RBMX2Q9Y388 322 aaKnown RBP3.37□□□□□ -1.87
UPF3B-203ENST00000478840 UBIAD1Q9Y5Z9 338 aa3.37□□□□□ -1.87
UPF3B-203ENST00000478840 IGHV5-10-1A0A0J9YXX1 117 aa3.36□□□□□ -1.87
UPF3B-203ENST00000478840 A0A1B0GVY2 172 aa3.36□□□□□ -1.87
UPF3B-203ENST00000478840 H0Y9J4 135 aa3.36□□□□□ -1.87
UPF3B-203ENST00000478840 DFFAO00273 331 aa3.36□□□□□ -1.87
UPF3B-203ENST00000478840 RRP8O43159 456 aaKnown RBP3.36□□□□□ -1.87
UPF3B-203ENST00000478840 GATCO43716 136 aaKnown RBP3.36□□□□□ -1.87
UPF3B-203ENST00000478840 RAD1O60671 282 aa3.36□□□□□ -1.87
UPF3B-203ENST00000478840 GCGP01275 180 aa3.36□□□□□ -1.87
UPF3B-203ENST00000478840 TLX1NBP0CAT3 122 aa3.36□□□□□ -1.87
UPF3B-203ENST00000478840 IGHV1-8P0DP01 117 aa3.36□□□□□ -1.87
UPF3B-203ENST00000478840 THRAP10827 490 aa3.36□□□□□ -1.87
UPF3B-203ENST00000478840 PRKACBP22694 351 aa3.36□□□□□ -1.87
UPF3B-203ENST00000478840 LCN1P31025 176 aa3.36□□□□□ -1.87
UPF3B-203ENST00000478840 SSTR5P35346 364 aa3.36□□□□□ -1.87
UPF3B-203ENST00000478840 PSG3Q16557 428 aa3.36□□□□□ -1.87
UPF3B-203ENST00000478840 C2orf83Q53S99 150 aa3.36□□□□□ -1.87
UPF3B-203ENST00000478840 TCEAL5Q5H9L2 206 aa3.36□□□□□ -1.87
UPF3B-203ENST00000478840 LCE3CQ5T5A8 94 aa3.36□□□□□ -1.87
UPF3B-203ENST00000478840 CPTPQ5TA50 214 aa3.36□□□□□ -1.87
UPF3B-203ENST00000478840 CD300LGQ6UXG3 332 aa3.36□□□□□ -1.87
UPF3B-203ENST00000478840 MKXQ8IYA7 352 aa3.36□□□□□ -1.87
UPF3B-203ENST00000478840 ZNF433Q8N7K0 673 aaPredicted RBP3.36□□□□□ -1.87
UPF3B-203ENST00000478840 LINC00469Q8N7U9 141 aa3.36□□□□□ -1.87
UPF3B-203ENST00000478840 OR10G6Q8NH81 332 aa3.36□□□□□ -1.87
UPF3B-203ENST00000478840 TMEM234Q8WY98 164 aa3.36□□□□□ -1.87
UPF3B-203ENST00000478840 TCEAL3Q969E4 200 aa3.36□□□□□ -1.87
UPF3B-203ENST00000478840 TM4SF18Q96CE8 201 aa3.36□□□□□ -1.87
UPF3B-203ENST00000478840 ZNF799Q96GE5 643 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms