RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 ECH1Q13011 328 aa13.93□□□□□ -0.18
USP40-212ENST00000473191 TRIM25Q14258 630 aaKnown RBP13.93□□□□□ -0.18
USP40-212ENST00000473191 MICAQ29983 383 aa13.93□□□□□ -0.18
USP40-212ENST00000473191 ZNF404Q494X3 552 aa13.93□□□□□ -0.18
USP40-212ENST00000473191 ESCO2Q56NI9 601 aa13.93□□□□□ -0.18
USP40-212ENST00000473191 LINC01590Q5TEZ4 76 aa13.93□□□□□ -0.18
USP40-212ENST00000473191 OR2T5Q6IEZ7 315 aa13.93□□□□□ -0.18
USP40-212ENST00000473191 MRPL21Q7Z2W9 205 aaKnown RBP13.93□□□□□ -0.18
USP40-212ENST00000473191 TMEM179BQ7Z7N9 219 aa13.93□□□□□ -0.18
USP40-212ENST00000473191 OR2T4Q8NH00 348 aa13.93□□□□□ -0.18
USP40-212ENST00000473191 OR2T29Q8NH02 315 aa13.93□□□□□ -0.18
USP40-212ENST00000473191 DACT3Q96B18 629 aaPredicted RBP13.93□□□□□ -0.18
USP40-212ENST00000473191 CCDC124Q96CT7 223 aaKnown RBP13.93□□□□□ -0.18
USP40-212ENST00000473191 SSBP3Q9BWW4 388 aaPredicted RBP13.93□□□□□ -0.18
USP40-212ENST00000473191 SUCNR1Q9BXA5 334 aa13.93□□□□□ -0.18
USP40-212ENST00000473191 MAGIXQ9H6Y5 334 aa13.93□□□□□ -0.18
USP40-212ENST00000473191 PPP1R3EQ9H7J1 279 aa13.93□□□□□ -0.18
USP40-212ENST00000473191 FAM183AA6NL82 134 aa13.92□□□□□ -0.18
USP40-212ENST00000473191 CD300LBA8K4G0 201 aa13.92□□□□□ -0.18
USP40-212ENST00000473191 TRIM77I1YAP6 450 aa13.92□□□□□ -0.18
USP40-212ENST00000473191 ZNF593O00488 134 aaPredicted RBP13.92□□□□□ -0.18
USP40-212ENST00000473191 CD200P41217 278 aa13.92□□□□□ -0.18
USP40-212ENST00000473191 GATA4P43694 442 aa13.92□□□□□ -0.18
USP40-212ENST00000473191 UBA52P62987 128 aaKnown RBP13.92□□□□□ -0.18
USP40-212ENST00000473191 SCGB2A2Q13296 93 aa13.92□□□□□ -0.18
USP40-212ENST00000473191 PCK2Q16822 640 aa13.92□□□□□ -0.18
USP40-212ENST00000473191 ZNF181Q2M3W8 571 aa13.92□□□□□ -0.18
USP40-212ENST00000473191 ARMCX4Q5H9R4 360 aa13.92□□□□□ -0.18
USP40-212ENST00000473191 SFRP4Q6FHJ7 346 aaPredicted RBP13.92□□□□□ -0.18
USP40-212ENST00000473191 RPL13AP3Q6NVV1 102 aa13.92□□□□□ -0.18
USP40-212ENST00000473191 MUC20Q8N307 709 aaPredicted RBP13.92□□□□□ -0.18
USP40-212ENST00000473191 TEX29Q8N6K0 151 aa13.92□□□□□ -0.18
USP40-212ENST00000473191 SPRYD4Q8WW59 207 aaPredicted RBP13.92□□□□□ -0.18
USP40-212ENST00000473191 POP5Q969H6 163 aaKnown RBP13.92□□□□□ -0.18
USP40-212ENST00000473191 SLAMF6Q96DU3 332 aa13.92□□□□□ -0.18
USP40-212ENST00000473191 AMELYQ99218 206 aa13.92□□□□□ -0.18
USP40-212ENST00000473191 CENPMQ9NSP4 180 aa13.92□□□□□ -0.18
USP40-212ENST00000473191 NUP50Q9UKX7 468 aa13.92□□□□□ -0.18
USP40-212ENST00000473191 C3orf80F5H4A9 247 aa13.91□□□□□ -0.18
USP40-212ENST00000473191 FCN3O75636 299 aa13.91□□□□□ -0.18
USP40-212ENST00000473191 ENTPD1P49961 510 aa13.91□□□□□ -0.18
USP40-212ENST00000473191 GNB2P62879 340 aa13.91□□□□□ -0.18
USP40-212ENST00000473191 MALLQ13021 153 aa13.91□□□□□ -0.18
USP40-212ENST00000473191 ZNF841Q6ZN19 808 aa13.91□□□□□ -0.18
USP40-212ENST00000473191 ZNF826PQ6ZT77 177 aa13.91□□□□□ -0.18
USP40-212ENST00000473191 HS3ST5Q8IZT8 346 aa13.91□□□□□ -0.18
USP40-212ENST00000473191 OR10G2Q8NGC3 310 aa13.91□□□□□ -0.18
USP40-212ENST00000473191 OR6K6Q8NGW6 343 aa13.91□□□□□ -0.18
USP40-212ENST00000473191 GCDHQ92947 438 aaPredicted RBP13.91□□□□□ -0.18
USP40-212ENST00000473191 SPTSSAQ969W0 71 aa13.91□□□□□ -0.18
USP40-212ENST00000473191 COPS4Q9BT78 406 aa13.91□□□□□ -0.18
USP40-212ENST00000473191 DGCR6LQ9BY27 220 aa13.91□□□□□ -0.18
USP40-212ENST00000473191 REEP1Q9H902 201 aa13.91□□□□□ -0.18
USP40-212ENST00000473191 TAS2R1Q9NYW7 299 aa13.91□□□□□ -0.18
USP40-212ENST00000473191 CTSZQ9UBR2 303 aa13.91□□□□□ -0.18
USP40-212ENST00000473191 OR5V1Q9UGF6 321 aa13.91□□□□□ -0.18
USP40-212ENST00000473191 KCNG2Q9UJ96 466 aa13.91□□□□□ -0.18
USP40-212ENST00000473191 LRCH1Q9Y2L9 728 aa13.91□□□□□ -0.18
USP40-212ENST00000473191 TENM1Q9UKZ4 2725 aa13.9□□□□□ -0.18
USP40-212ENST00000473191 IGHV2-70DA0A0C4DH43 119 aa13.9□□□□□ -0.18
USP40-212ENST00000473191 MDFIC2A0A1B0GVS7 189 aa13.9□□□□□ -0.18
USP40-212ENST00000473191 DHRS12A0PJE2 317 aa13.9□□□□□ -0.18
USP40-212ENST00000473191 ACOT8O14734 319 aa13.9□□□□□ -0.18
USP40-212ENST00000473191 CALB2P22676 271 aa13.9□□□□□ -0.18
USP40-212ENST00000473191 FMO3P31513 532 aa13.9□□□□□ -0.18
USP40-212ENST00000473191 COMPP49747 757 aaPredicted RBP13.9□□□□□ -0.18
USP40-212ENST00000473191 SLC25A1P53007 311 aa13.9□□□□□ -0.18
USP40-212ENST00000473191 ELF3P78545 371 aaPredicted RBP13.9□□□□□ -0.18
USP40-212ENST00000473191 OR8G1Q15617 311 aa13.9□□□□□ -0.18
USP40-212ENST00000473191 ADGRG5Q8IZF4 528 aa13.9□□□□□ -0.18
USP40-212ENST00000473191 LINC00471Q8N535 108 aa13.9□□□□□ -0.18
USP40-212ENST00000473191 BOLLQ8N9W6 283 aaKnown RBP13.9□□□□□ -0.18
USP40-212ENST00000473191 OR2T33Q8NG76 320 aa13.9□□□□□ -0.18
USP40-212ENST00000473191 OR56B2PQ8NGI1 322 aa13.9□□□□□ -0.18
USP40-212ENST00000473191 Q8TCH9 128 aa13.9□□□□□ -0.18
USP40-212ENST00000473191 NEIL1Q96FI4 390 aaPredicted RBP13.9□□□□□ -0.18
USP40-212ENST00000473191 FEVQ99581 238 aa13.9□□□□□ -0.18
USP40-212ENST00000473191 KCNJ15Q99712 375 aa13.9□□□□□ -0.18
USP40-212ENST00000473191 ADAT1Q9BUB4 502 aaKnown RBP13.9□□□□□ -0.18
USP40-212ENST00000473191 MRI1Q9BV20 369 aa13.9□□□□□ -0.18
USP40-212ENST00000473191 ZNF319Q9P2F9 582 aa13.9□□□□□ -0.18
USP40-212ENST00000473191 GGT3PA6NGU5 568 aa13.89□□□□□ -0.19
USP40-212ENST00000473191 DNAJC9-AS1A6NH13 148 aa13.89□□□□□ -0.19
USP40-212ENST00000473191 C22orf46C9J442 243 aa13.89□□□□□ -0.19
USP40-212ENST00000473191 IFNL4K9M1U5 179 aa13.89□□□□□ -0.19
USP40-212ENST00000473191 FAM107AO95990 144 aa13.89□□□□□ -0.19
USP40-212ENST00000473191 FPR2P25090 351 aa13.89□□□□□ -0.19
USP40-212ENST00000473191 MNAT1P51948 309 aa13.89□□□□□ -0.19
USP40-212ENST00000473191 POU4F2Q12837 409 aa13.89□□□□□ -0.19
USP40-212ENST00000473191 FAM98BQ52LJ0 330 aaKnown RBP13.89□□□□□ -0.19
USP40-212ENST00000473191 DRAM2Q6UX65 266 aa13.89□□□□□ -0.19
USP40-212ENST00000473191 WDR86Q86TI4 376 aa13.89□□□□□ -0.19
USP40-212ENST00000473191 CELF2-AS1Q8N7Q2 184 aa13.89□□□□□ -0.19
USP40-212ENST00000473191 CCDC197Q8NCU1 140 aa13.89□□□□□ -0.19
USP40-212ENST00000473191 CANT1Q8WVQ1 401 aa13.89□□□□□ -0.19
USP40-212ENST00000473191 RAB40AQ8WXH6 277 aa13.89□□□□□ -0.19
USP40-212ENST00000473191 ASB9Q96DX5 294 aa13.89□□□□□ -0.19
USP40-212ENST00000473191 THTPAQ9BU02 230 aa13.89□□□□□ -0.19
USP40-212ENST00000473191 CHID1Q9BWS9 393 aa13.89□□□□□ -0.19
USP40-212ENST00000473191 RASSF4Q9H2L5 321 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms