RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 TAF13Q15543 124 aa13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 ARMCX4Q5H9R4 360 aa13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 PRAMEF6Q5VXH4 476 aa13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 SPATC1Q76KD6 591 aa13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 C1orf87Q8N0U7 546 aa13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 IQCF1Q8N6M8 205 aa13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 DEFB108BQ8NET1 73 aa13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 TEX47Q8TBZ9 253 aa13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 FAM216AQ8WUB2 273 aa13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 GCDHQ92947 438 aaPredicted RBP13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 OTULINQ96BN8 352 aa13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 SLAMF6Q96DU3 332 aa13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 SUCNR1Q9BXA5 334 aa13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 TMEM165Q9HC07 324 aa13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 TAS2R1Q9NYW7 299 aa13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 OR5V1Q9UGF6 321 aa13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 MEGF8Q7Z7M0 2845 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 A0A1B0GWJ7 208 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 TMEM89A2RUT3 159 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 GGT3PA6NGU5 568 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 CD300LBA8K4G0 201 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 A8MXK9 166 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 H3BN98 237 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 ZNF593O00488 134 aaPredicted RBP13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 CST1P01037 141 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 FSHBP01225 129 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 SLC2A1P11166 492 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 ZNF12P17014 697 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 EGR1P18146 543 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 CA6P23280 308 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 PMELP40967 661 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 RAD23AP54725 363 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 ZNF154Q13106 437 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 MAB21L1Q13394 359 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 OR8G1Q15617 311 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 GLYATL3Q5SZD4 288 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 DRAM2Q6UX65 266 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 USP43Q70EL4 1123 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 KLBQ86Z14 1044 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 ADGRG5Q8IZF4 528 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 C3orf56Q8N813 242 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 GIPC3Q8TF64 312 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 POP5Q969H6 163 aaKnown RBP13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 TMEM246Q9BRR3 403 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 ADAT1Q9BUB4 502 aaKnown RBP13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 CHID1Q9BWS9 393 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 SSBP3Q9BWW4 388 aaPredicted RBP13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 NMNAT2Q9BZQ4 307 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 MED20Q9H944 212 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 UFSP2Q9NUQ7 469 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 LRCH1Q9Y2L9 728 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 POLR3KQ9Y2Y1 108 aaPredicted RBP13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 INSIG2Q9Y5U4 225 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 AUP1Q9Y679 476 aa13.17□□□□□ -0.3
CCDC88B-205ENST00000472524 FAM183AA6NL82 134 aa13.16□□□□□ -0.3
CCDC88B-205ENST00000472524 ZNF878C9JN71 531 aa13.16□□□□□ -0.3
CCDC88B-205ENST00000472524 TRIM77I1YAP6 450 aa13.16□□□□□ -0.3
CCDC88B-205ENST00000472524 GNGT2O14610 69 aa13.16□□□□□ -0.3
CCDC88B-205ENST00000472524 FAM20BO75063 409 aa13.16□□□□□ -0.3
CCDC88B-205ENST00000472524 WNT2P09544 360 aa13.16□□□□□ -0.3
CCDC88B-205ENST00000472524 OTX1P32242 354 aaPredicted RBP13.16□□□□□ -0.3
CCDC88B-205ENST00000472524 CD200P41217 278 aa13.16□□□□□ -0.3
CCDC88B-205ENST00000472524 GNB2P62879 340 aa13.16□□□□□ -0.3
CCDC88B-205ENST00000472524 ZNF181Q2M3W8 571 aa13.16□□□□□ -0.3
CCDC88B-205ENST00000472524 C19orf18Q8NEA5 215 aa13.16□□□□□ -0.3
CCDC88B-205ENST00000472524 OR11L1Q8NGX0 322 aa13.16□□□□□ -0.3
CCDC88B-205ENST00000472524 OR6N2Q8NGY6 317 aa13.16□□□□□ -0.3
CCDC88B-205ENST00000472524 DVL3Q92997 716 aaPredicted RBP13.16□□□□□ -0.3
CCDC88B-205ENST00000472524 JMJD8Q96S16 334 aa13.16□□□□□ -0.3
CCDC88B-205ENST00000472524 FEVQ99581 238 aa13.16□□□□□ -0.3
CCDC88B-205ENST00000472524 KCNJ15Q99712 375 aa13.16□□□□□ -0.3
CCDC88B-205ENST00000472524 MRI1Q9BV20 369 aa13.16□□□□□ -0.3
CCDC88B-205ENST00000472524 C1orf21Q9H246 121 aa13.16□□□□□ -0.3
CCDC88B-205ENST00000472524 CMC2Q9NRP2 79 aa13.16□□□□□ -0.3
CCDC88B-205ENST00000472524 MIOXQ9UGB7 285 aa13.16□□□□□ -0.3
CCDC88B-205ENST00000472524 PPIAL4AQ9Y536 164 aa13.16□□□□□ -0.3
CCDC88B-205ENST00000472524 DHRS12A0PJE2 317 aa13.15□□□□□ -0.3
CCDC88B-205ENST00000472524 DYNC1I1O14576 645 aa13.15□□□□□ -0.3
CCDC88B-205ENST00000472524 ACOT8O14734 319 aa13.15□□□□□ -0.3
CCDC88B-205ENST00000472524 TBX1O43435 398 aa13.15□□□□□ -0.3
CCDC88B-205ENST00000472524 FPR2P25090 351 aa13.15□□□□□ -0.3
CCDC88B-205ENST00000472524 POU1F1P28069 291 aa13.15□□□□□ -0.3
CCDC88B-205ENST00000472524 GRK5P34947 590 aa13.15□□□□□ -0.3
CCDC88B-205ENST00000472524 GATA4P43694 442 aa13.15□□□□□ -0.3
CCDC88B-205ENST00000472524 HOXA4Q00056 320 aaPredicted RBP13.15□□□□□ -0.3
CCDC88B-205ENST00000472524 EIF2B1Q14232 305 aaKnown RBP13.15□□□□□ -0.3
CCDC88B-205ENST00000472524 MPPED2Q15777 294 aa13.15□□□□□ -0.3
CCDC88B-205ENST00000472524 PCK2Q16822 640 aa13.15□□□□□ -0.3
CCDC88B-205ENST00000472524 ZNF404Q494X3 552 aa13.15□□□□□ -0.3
CCDC88B-205ENST00000472524 TEX30Q5JUR7 227 aa13.15□□□□□ -0.3
CCDC88B-205ENST00000472524 LINC01590Q5TEZ4 76 aa13.15□□□□□ -0.3
CCDC88B-205ENST00000472524 TMEM179BQ7Z7N9 219 aa13.15□□□□□ -0.3
CCDC88B-205ENST00000472524 ERI1Q8IV48 349 aaKnown RBP13.15□□□□□ -0.3
CCDC88B-205ENST00000472524 CELF2-AS1Q8N7Q2 184 aa13.15□□□□□ -0.3
CCDC88B-205ENST00000472524 OR8B3Q8NGG8 313 aa13.15□□□□□ -0.3
CCDC88B-205ENST00000472524 CANT1Q8WVQ1 401 aa13.15□□□□□ -0.3
CCDC88B-205ENST00000472524 NEIL1Q96FI4 390 aaPredicted RBP13.15□□□□□ -0.3
CCDC88B-205ENST00000472524 OR8B2Q96RD0 313 aa13.15□□□□□ -0.3
CCDC88B-205ENST00000472524 ESM1Q9NQ30 184 aa13.15□□□□□ -0.3
CCDC88B-205ENST00000472524 PDP1Q9P0J1 537 aaPredicted RBP13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms