RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 PRSS51A0A1B0GVH4 220 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 A0A1W2PP11 408 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 OVOL1O14753 267 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 ITM2AO43736 263 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 SCELO95171 688 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 H6PDO95479 791 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 IGLV2-14P01704 120 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 GZMAP12544 262 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 BMI1P35226 326 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 GRIA1P42261 906 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 FRKP42685 505 aaPredicted RBP3.64□□□□□ -1.83
HMGB1-207ENST00000468384 MAPK12P53778 367 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 MFAP2P55001 183 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 SH3BGRP55822 239 aaPredicted RBP3.64□□□□□ -1.83
HMGB1-207ENST00000468384 PSPHP78330 225 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 GAGE2BQ13066 116 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 HNF4GQ14541 408 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 CTF1Q16619 201 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 EXOC3L4Q17RC7 722 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 GAGE2EQ4V326 116 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 GAGE2AQ6NT46 116 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 SLC25A24Q6NUK1 477 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 TMPRSS11FQ6ZWK6 438 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 GTSCR1Q86UQ5 136 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 GPR180Q86V85 440 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 CLIP4Q8N3C7 705 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 Q8N7P7 452 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 NIPA2Q8N8Q9 360 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 C15orf53Q8NAA6 179 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 OR11H1Q8NG94 326 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 C11orf45Q8TAV5 145 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 RPS4Y2Q8TD47 263 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 UBTD2Q8WUN7 234 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 CTNNBL1Q8WYA6 563 aaPredicted RBP3.64□□□□□ -1.83
HMGB1-207ENST00000468384 RGP1Q92546 391 aaPredicted RBP3.64□□□□□ -1.83
HMGB1-207ENST00000468384 UBE2E3Q969T4 207 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 MOB3AQ96BX8 217 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 AMDHD1Q96NU7 426 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 ALS2CR12Q96Q35 445 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 ALKBH3Q96Q83 286 aaPredicted RBP3.64□□□□□ -1.83
HMGB1-207ENST00000468384 TXN2Q99757 166 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 OSBPL8Q9BZF1 889 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 ISCUQ9H1K1 167 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 HHATLQ9HCP6 504 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 SLC35D1Q9NTN3 355 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 B3GNT2Q9NY97 397 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 GALPQ9UBC7 116 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 GAGE2DQ9UEU5 116 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 ZNF639Q9UID6 485 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 ZNF490Q9ULM2 529 aaPredicted RBP3.64□□□□□ -1.83
HMGB1-207ENST00000468384 COMMD3-BMI1R4GMX3 469 aa3.64□□□□□ -1.83
HMGB1-207ENST00000468384 MS4A18H0YCH9 400 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 SULT2B1O00204 365 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 FCGR3BO75015 233 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 TSC22D2O75157 780 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 FSTL3O95633 263 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 PTBP3O95758 552 aaKnown RBP3.63□□□□□ -1.83
HMGB1-207ENST00000468384 CYB5R3P00387 301 aaPredicted RBP3.63□□□□□ -1.83
HMGB1-207ENST00000468384 HLA-HP01893 362 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 CSN3P07498 182 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 CPMP14384 443 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 EPORP19235 508 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 PRPS1L1P21108 318 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 FDFT1P37268 417 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 RPL3P39023 403 aaKnown RBP3.63□□□□□ -1.83
HMGB1-207ENST00000468384 SLC1A1P43005 524 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 MAGEA4P43358 317 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 KIR3DL2P43630 455 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 CDX1P47902 265 aaPredicted RBP3.63□□□□□ -1.83
HMGB1-207ENST00000468384 RASSF2P50749 326 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 GEMP55040 296 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 GMFBP60983 142 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 LRRC63Q05C16 580 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 PNRC1Q12796 327 aaPredicted RBP3.63□□□□□ -1.83
HMGB1-207ENST00000468384 HES1Q14469 280 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 ODF3L2Q3SX64 289 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 ABCA11PQ4W5N1 156 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 ATP6AP1LQ52LC2 224 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 TMEM255AQ5JRV8 349 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 CTSL3PQ5NE16 218 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 ETFRF1Q6IPR1 90 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 AFTPHQ6ULP2 937 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 ZNF788Q6ZQV5 615 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 TMPPEQ6ZT21 453 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 PID1Q7Z2X4 250 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 TMPRSS11BQ86T26 416 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 CCDC36Q8IYA8 594 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 PRELID2Q8N945 189 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 NEXN-AS1Q8NBZ9 246 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 OR4L1Q8NH43 312 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 GIMAP1Q8WWP7 306 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 DCUN1D4Q92564 292 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 SH3YL1Q96HL8 342 aaPredicted RBP3.63□□□□□ -1.83
HMGB1-207ENST00000468384 OLFM3Q96PB7 478 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 QTRT1Q9BXR0 403 aaKnown RBP3.63□□□□□ -1.83
HMGB1-207ENST00000468384 ACPTQ9BZG2 426 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 SRD5A3Q9H8P0 318 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 Q9N2K0 584 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 DNAJC4Q9NNZ3 241 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 POLE3Q9NRF9 147 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms