RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 CLN6Q9NWW5 311 aa15.13■□□□□ 0.01
COL7A1-205ENST00000465238 SLCO1C1Q9NYB5 712 aa15.13■□□□□ 0.01
COL7A1-205ENST00000465238 TAAR3PQ9P1P4 343 aa15.13■□□□□ 0.01
COL7A1-205ENST00000465238 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP15.13■□□□□ 0.01
COL7A1-205ENST00000465238 IGLV3-9A0A075B6K5 115 aa15.12■□□□□ 0.01
COL7A1-205ENST00000465238 H3BSA7 217 aa15.12■□□□□ 0.01
COL7A1-205ENST00000465238 ENTPD6O75354 484 aa15.12■□□□□ 0.01
COL7A1-205ENST00000465238 DAOP14920 347 aa15.12■□□□□ 0.01
COL7A1-205ENST00000465238 NKPD1Q17RQ9 610 aa15.12■□□□□ 0.01
COL7A1-205ENST00000465238 FAM120AOSQ5T036 256 aa15.12■□□□□ 0.01
COL7A1-205ENST00000465238 MBNL2Q5VZF2 373 aaKnown RBP15.12■□□□□ 0.01
COL7A1-205ENST00000465238 KCTD18Q6PI47 426 aaPredicted RBP15.12■□□□□ 0.01
COL7A1-205ENST00000465238 KRT77Q7Z794 578 aa15.12■□□□□ 0.01
COL7A1-205ENST00000465238 NAA40Q86UY6 237 aa15.12■□□□□ 0.01
COL7A1-205ENST00000465238 SLC35F2Q8IXU6 374 aa15.12■□□□□ 0.01
COL7A1-205ENST00000465238 ENTHD1Q8IYW4 607 aa15.12■□□□□ 0.01
COL7A1-205ENST00000465238 RHOXF1Q8NHV9 184 aa15.12■□□□□ 0.01
COL7A1-205ENST00000465238 MNTQ99583 582 aa15.12■□□□□ 0.01
COL7A1-205ENST00000465238 C1QTNF5Q9BXJ0 243 aa15.12■□□□□ 0.01
COL7A1-205ENST00000465238 ADGRL4Q9HBW9 690 aa15.12■□□□□ 0.01
COL7A1-205ENST00000465238 MYEF2Q9P2K5 600 aaKnown RBP15.12■□□□□ 0.01
COL7A1-205ENST00000465238 KLHDC2Q9Y2U9 406 aa15.12■□□□□ 0.01
COL7A1-205ENST00000465238 ZNF670-ZNF695F2Z2N8 137 aa15.11■□□□□ 0.01
COL7A1-205ENST00000465238 M0R233 179 aa15.11■□□□□ 0.01
COL7A1-205ENST00000465238 PHYHO14832 338 aa15.11■□□□□ 0.01
COL7A1-205ENST00000465238 TGFAP01135 160 aa15.11■□□□□ 0.01
COL7A1-205ENST00000465238 IGHV3-13P01766 116 aa15.11■□□□□ 0.01
COL7A1-205ENST00000465238 MT-ND5P03915 603 aa15.11■□□□□ 0.01
COL7A1-205ENST00000465238 ADRA2AP08913 450 aa15.11■□□□□ 0.01
COL7A1-205ENST00000465238 SBK2P0C263 348 aa15.11■□□□□ 0.01
COL7A1-205ENST00000465238 OTX1P32242 354 aaPredicted RBP15.11■□□□□ 0.01
COL7A1-205ENST00000465238 MPV17P39210 176 aa15.11■□□□□ 0.01
COL7A1-205ENST00000465238 OPRL1P41146 370 aa15.11■□□□□ 0.01
COL7A1-205ENST00000465238 MALLQ13021 153 aa15.11■□□□□ 0.01
COL7A1-205ENST00000465238 RIPK1Q13546 671 aa15.11■□□□□ 0.01
COL7A1-205ENST00000465238 MAD2L1BPQ15013 274 aaPredicted RBP15.11■□□□□ 0.01
COL7A1-205ENST00000465238 COLCA1Q6ZS62 124 aa15.11■□□□□ 0.01
COL7A1-205ENST00000465238 ZNF786Q8N393 782 aa15.11■□□□□ 0.01
COL7A1-205ENST00000465238 SNX33Q8WV41 574 aa15.11■□□□□ 0.01
COL7A1-205ENST00000465238 ASB17Q8WXJ9 295 aa15.11■□□□□ 0.01
COL7A1-205ENST00000465238 MS4A5Q9H3V2 200 aa15.11■□□□□ 0.01
COL7A1-205ENST00000465238 POFUT1Q9H488 388 aa15.11■□□□□ 0.01
COL7A1-205ENST00000465238 SP140LQ9H930 580 aa15.11■□□□□ 0.01
COL7A1-205ENST00000465238 PTTG3PQ9NZH4 202 aa15.11■□□□□ 0.01
COL7A1-205ENST00000465238 N6AMT1Q9Y5N5 214 aa15.11■□□□□ 0.01
COL7A1-205ENST00000465238 TACSTD2P09758 323 aa15.1■□□□□ 0.01
COL7A1-205ENST00000465238 GABRB1P18505 474 aa15.1■□□□□ 0.01
COL7A1-205ENST00000465238 ALDH3B1P43353 468 aa15.1■□□□□ 0.01
COL7A1-205ENST00000465238 MTNR1AP48039 350 aa15.1■□□□□ 0.01
COL7A1-205ENST00000465238 CX3CR1P49238 355 aa15.1■□□□□ 0.01
COL7A1-205ENST00000465238 CHN2P52757 468 aa15.1■□□□□ 0.01
COL7A1-205ENST00000465238 IL5RAQ01344 420 aa15.1■□□□□ 0.01
COL7A1-205ENST00000465238 ZCCHC24Q8N2G6 241 aaKnown RBP15.1■□□□□ 0.01
COL7A1-205ENST00000465238 SETD9Q8NE22 299 aa15.1■□□□□ 0.01
COL7A1-205ENST00000465238 HPS1Q92902 700 aa15.1■□□□□ 0.01
COL7A1-205ENST00000465238 CMBLQ96DG6 245 aa15.1■□□□□ 0.01
COL7A1-205ENST00000465238 ADI1Q9BV57 179 aa15.1■□□□□ 0.01
COL7A1-205ENST00000465238 MROQ9BYG7 248 aa15.1■□□□□ 0.01
COL7A1-205ENST00000465238 VCX3BQ9H321 246 aa15.1■□□□□ 0.01
COL7A1-205ENST00000465238 NIPAL2Q9H841 368 aa15.1■□□□□ 0.01
COL7A1-205ENST00000465238 AASSQ9UDR5 926 aa15.1■□□□□ 0.01
COL7A1-205ENST00000465238 COPS3Q9UNS2 423 aa15.1■□□□□ 0.01
COL7A1-205ENST00000465238 PLSCR5A0PG75 271 aa15.09■□□□□ 0.01
COL7A1-205ENST00000465238 TIMM8AO60220 97 aaPredicted RBP15.09■□□□□ 0.01
COL7A1-205ENST00000465238 ATP6V1G2O95670 118 aa15.09■□□□□ 0.01
COL7A1-205ENST00000465238 ANXA2P07355 339 aaKnown RBP15.09■□□□□ 0.01
COL7A1-205ENST00000465238 OR2T7P0C7T2 308 aa15.09■□□□□ 0.01
COL7A1-205ENST00000465238 RAC2P15153 192 aa15.09■□□□□ 0.01
COL7A1-205ENST00000465238 CAPGP40121 348 aa15.09■□□□□ 0.01
COL7A1-205ENST00000465238 CXCR4P61073 352 aa15.09■□□□□ 0.01
COL7A1-205ENST00000465238 ADARB1P78563 741 aaKnown RBP15.09■□□□□ 0.01
COL7A1-205ENST00000465238 PSG7Q13046 419 aa15.09■□□□□ 0.01
COL7A1-205ENST00000465238 IL18R1Q13478 541 aa15.09■□□□□ 0.01
COL7A1-205ENST00000465238 ALKBH6Q3KRA9 238 aa15.09■□□□□ 0.01
COL7A1-205ENST00000465238 KRTAP24-1Q3LI83 254 aa15.09■□□□□ 0.01
COL7A1-205ENST00000465238 ZNF691Q5VV52 312 aa15.09■□□□□ 0.01
COL7A1-205ENST00000465238 DEGS2Q6QHC5 323 aa15.09■□□□□ 0.01
COL7A1-205ENST00000465238 LRRN1Q6UXK5 716 aa15.09■□□□□ 0.01
COL7A1-205ENST00000465238 FBXW12Q6X9E4 464 aa15.09■□□□□ 0.01
COL7A1-205ENST00000465238 IL17RELQ6ZVW7 336 aa15.09■□□□□ 0.01
COL7A1-205ENST00000465238 OR10H4Q8NGA5 316 aa15.09■□□□□ 0.01
COL7A1-205ENST00000465238 OR2T27Q8NH04 317 aa15.09■□□□□ 0.01
COL7A1-205ENST00000465238 UBASH3BQ8TF42 649 aa15.09■□□□□ 0.01
COL7A1-205ENST00000465238 NRG4Q8WWG1 115 aa15.09■□□□□ 0.01
COL7A1-205ENST00000465238 HAVCR1Q96D42 359 aa15.09■□□□□ 0.01
COL7A1-205ENST00000465238 RNFT2Q96EX2 444 aa15.09■□□□□ 0.01
COL7A1-205ENST00000465238 IKZF2Q9UKS7 526 aa15.09■□□□□ 0.01
COL7A1-205ENST00000465238 LRP5LA4QPB2 252 aa15.08■□□□□ 0
COL7A1-205ENST00000465238 H0YAE9 185 aa15.08■□□□□ 0
COL7A1-205ENST00000465238 LILRA1O75019 489 aa15.08■□□□□ 0
COL7A1-205ENST00000465238 ZNF254O75437 659 aa15.08■□□□□ 0
COL7A1-205ENST00000465238 APOL3O95236 402 aa15.08■□□□□ 0
COL7A1-205ENST00000465238 CLIC3O95833 236 aa15.08■□□□□ 0
COL7A1-205ENST00000465238 SLC2A1P11166 492 aa15.08■□□□□ 0
COL7A1-205ENST00000465238 NAT2P11245 290 aa15.08■□□□□ 0
COL7A1-205ENST00000465238 LIPAP38571 399 aa15.08■□□□□ 0
COL7A1-205ENST00000465238 HLXQ14774 488 aaPredicted RBP15.08■□□□□ 0
COL7A1-205ENST00000465238 ZNF322Q6U7Q0 402 aaPredicted RBP15.08■□□□□ 0
COL7A1-205ENST00000465238 ZNF679Q8IYX0 411 aa15.08■□□□□ 0
COL7A1-205ENST00000465238 OR8B4Q96RC9 309 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms