RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 M0R135 149 aa13.37□□□□□ -0.27
COL7A1-204ENST00000462475 OR10H3O60404 316 aa13.37□□□□□ -0.27
COL7A1-204ENST00000462475 GADD45GO95257 159 aa13.37□□□□□ -0.27
COL7A1-204ENST00000462475 HLA-DQA2P01906 255 aa13.37□□□□□ -0.27
COL7A1-204ENST00000462475 PSKH1P11801 424 aa13.37□□□□□ -0.27
COL7A1-204ENST00000462475 NOS3P29474 1203 aa13.37□□□□□ -0.27
COL7A1-204ENST00000462475 CFHR2P36980 270 aa13.37□□□□□ -0.27
COL7A1-204ENST00000462475 TPTEP56180 551 aa13.37□□□□□ -0.27
COL7A1-204ENST00000462475 DEFA6Q01524 100 aa13.37□□□□□ -0.27
COL7A1-204ENST00000462475 SRSF4Q08170 494 aaKnown RBP13.37□□□□□ -0.27
COL7A1-204ENST00000462475 SFRP4Q6FHJ7 346 aaPredicted RBP13.37□□□□□ -0.27
COL7A1-204ENST00000462475 ZNF620Q6ZNG0 422 aa13.37□□□□□ -0.27
COL7A1-204ENST00000462475 BOLLQ8N9W6 283 aaKnown RBP13.37□□□□□ -0.27
COL7A1-204ENST00000462475 ZNF799Q96GE5 643 aa13.37□□□□□ -0.27
COL7A1-204ENST00000462475 SMURF1Q9HCE7 757 aa13.37□□□□□ -0.27
COL7A1-204ENST00000462475 ADA2Q9NZK5 511 aa13.37□□□□□ -0.27
COL7A1-204ENST00000462475 RNF7Q9UBF6 113 aa13.37□□□□□ -0.27
COL7A1-204ENST00000462475 MMP24Q9Y5R2 645 aa13.37□□□□□ -0.27
COL7A1-204ENST00000462475 VWFP04275 2813 aa13.36□□□□□ -0.27
COL7A1-204ENST00000462475 TGP01266 2768 aa13.36□□□□□ -0.27
COL7A1-204ENST00000462475 C3orf80F5H4A9 247 aa13.36□□□□□ -0.27
COL7A1-204ENST00000462475 LGALS8O00214 317 aa13.36□□□□□ -0.27
COL7A1-204ENST00000462475 PTBP3O95758 552 aaKnown RBP13.36□□□□□ -0.27
COL7A1-204ENST00000462475 MMP9P14780 707 aa13.36□□□□□ -0.27
COL7A1-204ENST00000462475 PYCR1P32322 319 aa13.36□□□□□ -0.27
COL7A1-204ENST00000462475 GSSP48637 474 aa13.36□□□□□ -0.27
COL7A1-204ENST00000462475 SMIM11AP58511 58 aa13.36□□□□□ -0.27
COL7A1-204ENST00000462475 RELBQ01201 579 aa13.36□□□□□ -0.27
COL7A1-204ENST00000462475 ZNF92Q03936 586 aa13.36□□□□□ -0.27
COL7A1-204ENST00000462475 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.36□□□□□ -0.27
COL7A1-204ENST00000462475 PDLIM3Q53GG5 364 aaPredicted RBP13.36□□□□□ -0.27
COL7A1-204ENST00000462475 SLC35F1Q5T1Q4 408 aa13.36□□□□□ -0.27
COL7A1-204ENST00000462475 FIP1L1Q6UN15 594 aaKnown RBP13.36□□□□□ -0.27
COL7A1-204ENST00000462475 LYPD4Q6UWN0 246 aa13.36□□□□□ -0.27
COL7A1-204ENST00000462475 Q6YL49 198 aa13.36□□□□□ -0.27
COL7A1-204ENST00000462475 OR2AE1Q8NHA4 323 aa13.36□□□□□ -0.27
COL7A1-204ENST00000462475 WFDC12Q8WWY7 111 aa13.36□□□□□ -0.27
COL7A1-204ENST00000462475 PYURFQ96I23 114 aa13.36□□□□□ -0.27
COL7A1-204ENST00000462475 TBX15Q96SF7 602 aa13.36□□□□□ -0.27
COL7A1-204ENST00000462475 CHIAQ9BZP6 476 aa13.36□□□□□ -0.27
COL7A1-204ENST00000462475 MYLK2Q9H1R3 596 aa13.36□□□□□ -0.27
COL7A1-204ENST00000462475 GORASP2Q9H8Y8 452 aa13.36□□□□□ -0.27
COL7A1-204ENST00000462475 FN3KRPQ9HA64 309 aa13.36□□□□□ -0.27
COL7A1-204ENST00000462475 PRKDCP78527 4128 aaKnown RBP13.36□□□□□ -0.27
COL7A1-204ENST00000462475 TVP23AA6NH52 213 aa13.35□□□□□ -0.27
COL7A1-204ENST00000462475 GMNNO75496 209 aa13.35□□□□□ -0.27
COL7A1-204ENST00000462475 MELTFP08582 738 aa13.35□□□□□ -0.27
COL7A1-204ENST00000462475 NPY4RP50391 375 aa13.35□□□□□ -0.27
COL7A1-204ENST00000462475 RAG2P55895 527 aa13.35□□□□□ -0.27
COL7A1-204ENST00000462475 GLYATL3Q5SZD4 288 aa13.35□□□□□ -0.27
COL7A1-204ENST00000462475 KIR3DL3Q8N743 410 aa13.35□□□□□ -0.27
COL7A1-204ENST00000462475 CYB561A3Q8NBI2 242 aa13.35□□□□□ -0.27
COL7A1-204ENST00000462475 ZNRF4Q8WWF5 429 aa13.35□□□□□ -0.27
COL7A1-204ENST00000462475 SPTSSAQ969W0 71 aa13.35□□□□□ -0.27
COL7A1-204ENST00000462475 CMTM5Q96DZ9 223 aa13.35□□□□□ -0.27
COL7A1-204ENST00000462475 SLC22A4Q9H015 551 aa13.35□□□□□ -0.27
COL7A1-204ENST00000462475 EGLN3Q9H6Z9 239 aa13.35□□□□□ -0.27
COL7A1-204ENST00000462475 C1RLQ9NZP8 487 aa13.35□□□□□ -0.27
COL7A1-204ENST00000462475 ERVK-18Q9QC07 812 aa13.35□□□□□ -0.27
COL7A1-204ENST00000462475 KCNG2Q9UJ96 466 aa13.35□□□□□ -0.27
COL7A1-204ENST00000462475 CENPVL3A0A0U1RRI6 287 aa13.34□□□□□ -0.27
COL7A1-204ENST00000462475 GGT3PA6NGU5 568 aa13.34□□□□□ -0.27
COL7A1-204ENST00000462475 ZNF879B4DU55 563 aa13.34□□□□□ -0.27
COL7A1-204ENST00000462475 P2RY10O00398 339 aa13.34□□□□□ -0.27
COL7A1-204ENST00000462475 TNFRSF13BO14836 293 aaPredicted RBP13.34□□□□□ -0.27
COL7A1-204ENST00000462475 ADAM20O43506 726 aa13.34□□□□□ -0.27
COL7A1-204ENST00000462475 IDH3BO43837 385 aa13.34□□□□□ -0.27
COL7A1-204ENST00000462475 FCN3O75636 299 aa13.34□□□□□ -0.27
COL7A1-204ENST00000462475 TOX4O94842 621 aa13.34□□□□□ -0.27
COL7A1-204ENST00000462475 KNG1P01042 644 aa13.34□□□□□ -0.27
COL7A1-204ENST00000462475 ZNF823P16415 610 aa13.34□□□□□ -0.27
COL7A1-204ENST00000462475 RRM2P31350 389 aa13.34□□□□□ -0.27
COL7A1-204ENST00000462475 OTX1P32242 354 aaPredicted RBP13.34□□□□□ -0.27
COL7A1-204ENST00000462475 BPIFB3P59826 476 aa13.34□□□□□ -0.27
COL7A1-204ENST00000462475 OR8B8Q15620 311 aa13.34□□□□□ -0.27
COL7A1-204ENST00000462475 PGBD2Q6P3X8 592 aa13.34□□□□□ -0.27
COL7A1-204ENST00000462475 ZNF826PQ6ZT77 177 aa13.34□□□□□ -0.27
COL7A1-204ENST00000462475 OR4F5Q8NH21 305 aa13.34□□□□□ -0.27
COL7A1-204ENST00000462475 DDOQ99489 341 aa13.34□□□□□ -0.27
COL7A1-204ENST00000462475 NSRP1Q9H0G5 558 aaKnown RBP13.34□□□□□ -0.27
COL7A1-204ENST00000462475 RASSF4Q9H2L5 321 aa13.34□□□□□ -0.27
COL7A1-204ENST00000462475 BEX1Q9HBH7 125 aa13.34□□□□□ -0.27
COL7A1-204ENST00000462475 NOX4Q9NPH5 578 aa13.34□□□□□ -0.27
COL7A1-204ENST00000462475 C1orf123Q9NWV4 160 aa13.34□□□□□ -0.27
COL7A1-204ENST00000462475 PDP1Q9P0J1 537 aaPredicted RBP13.34□□□□□ -0.27
COL7A1-204ENST00000462475 NOP16Q9Y3C1 178 aaKnown RBP13.34□□□□□ -0.27
COL7A1-204ENST00000462475 A0A1B0GUS0 222 aa13.33□□□□□ -0.28
COL7A1-204ENST00000462475 OOEPA6NGQ2 149 aa13.33□□□□□ -0.28
COL7A1-204ENST00000462475 GMDSO60547 372 aa13.33□□□□□ -0.28
COL7A1-204ENST00000462475 GYPAP02724 150 aa13.33□□□□□ -0.28
COL7A1-204ENST00000462475 FABP3P05413 133 aa13.33□□□□□ -0.28
COL7A1-204ENST00000462475 SLC2A1P11166 492 aa13.33□□□□□ -0.28
COL7A1-204ENST00000462475 PRDX6P30041 224 aa13.33□□□□□ -0.28
COL7A1-204ENST00000462475 MSX2P35548 267 aaPredicted RBP13.33□□□□□ -0.28
COL7A1-204ENST00000462475 IFNGR2P38484 337 aa13.33□□□□□ -0.28
COL7A1-204ENST00000462475 TSPAN31Q12999 210 aa13.33□□□□□ -0.28
COL7A1-204ENST00000462475 KCNJ8Q15842 424 aa13.33□□□□□ -0.28
COL7A1-204ENST00000462475 MIDNQ504T8 468 aa13.33□□□□□ -0.28
COL7A1-204ENST00000462475 ZNF362Q5T0B9 420 aaPredicted RBP13.33□□□□□ -0.28
COL7A1-204ENST00000462475 CD276Q5ZPR3 534 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms