RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 GALNT4Q8N4A0 578 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 LRRC75AQ8NAA5 344 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 AKR7LQ8NHP1 331 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 SLC25A40Q8TBP6 338 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 KLF14Q8TD94 323 aaPredicted RBP6.13□□□□□ -1.43
USP54-208ENST00000461520 IPCEF1Q8WWN9 437 aaPredicted RBP6.13□□□□□ -1.43
USP54-208ENST00000461520 ACOT11Q8WXI4 607 aaPredicted RBP6.13□□□□□ -1.43
USP54-208ENST00000461520 RAB1CQ92928 201 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 FAHD2AQ96GK7 314 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 C4orf45Q96LM5 186 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 FNDC11Q9BVV2 318 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 OR2H1Q9GZK4 316 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 OR2J1Q9GZK6 312 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 EGLN1Q9GZT9 426 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 WNT5BQ9H1J7 359 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 ELOVL3Q9HB03 270 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 G6PC2Q9NQR9 355 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 TUBG2Q9NRH3 451 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 FGFR1OP2Q9NVK5 253 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 WIPI2Q9Y4P8 454 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 CAPN7Q9Y6W3 813 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 A0A087WUU8 490 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 A0A0G2JMP0 313 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 A0A0X1KG70 313 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 ZSCAN5BA6NJL1 495 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 C12orf71A8MTZ7 269 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 EFCAB9A8MZ26 197 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 J3QLI3 93 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 SPRY3O43610 288 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 PLPP2O43688 288 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 AHCYL1O43865 530 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 VENTXO95231 258 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 IGHV2-5P01817 119 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 COX5BP10606 129 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 MSR1P21757 451 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 MPV17P39210 176 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 YAP1P46937 504 aaKnown RBP6.12□□□□□ -1.43
USP54-208ENST00000461520 ARHGDIAP52565 204 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 PPP1CBP62140 327 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 GLO1Q04760 184 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 FHL1Q13642 323 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 IFI44LQ53G44 452 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 SPATA46Q5T0L3 261 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 AVPI1Q5T686 147 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 RFPL4BQ6ZWI9 263 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 MBOAT2Q6ZWT7 520 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 USP43Q70EL4 1123 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 VTCN1Q7Z7D3 282 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 ZER1Q7Z7L7 766 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 IGFN1Q86VF2 1251 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 CLDN22Q8N7P3 220 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 FAM156AQ8NDB6 213 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 NPEPL1Q8NDH3 523 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 OR4M2Q8NGB6 313 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 OR51A7Q8NH64 312 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 ZNF418Q8TF45 676 aaPredicted RBP6.12□□□□□ -1.43
USP54-208ENST00000461520 GEMIN6Q8WXD5 167 aaKnown RBP6.12□□□□□ -1.43
USP54-208ENST00000461520 CCL17Q92583 94 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 GTF3AQ92664 365 aaKnown RBP6.12□□□□□ -1.43
USP54-208ENST00000461520 RCN3Q96D15 328 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 HOPXQ9BPY8 73 aaPredicted RBP6.12□□□□□ -1.43
USP54-208ENST00000461520 PLA2G12AQ9BZM1 189 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 ANKRD19PQ9H560 264 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 CCDC134Q9H6E4 229 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 MAN2C1Q9NTJ4 1040 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 CMTM6Q9NX76 183 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 GRHPRQ9UBQ7 328 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 KLHL21Q9UJP4 597 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 SNX13Q9Y5W8 968 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 CACNG2Q9Y698 323 aa6.12□□□□□ -1.43
USP54-208ENST00000461520 TRAV27A0A087WT01 109 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 J3KTA2 159 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 CXCR6O00574 342 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 NDUFAB1O14561 156 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 XKRYO14609 159 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 CDC42EP2O14613 210 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 FFAR1O14842 300 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 SPRY1O43609 319 aaPredicted RBP6.11□□□□□ -1.43
USP54-208ENST00000461520 ZNF682O95780 498 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 NGFP01138 241 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 CD55P08174 381 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 CD14P08571 375 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 GSTM3P21266 225 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 RPL4P36578 427 aaKnown RBP6.11□□□□□ -1.43
USP54-208ENST00000461520 HILS1P60008 231 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 LIPEQ05469 1076 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 SCRN3Q0VDG4 424 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 SF3A3Q12874 501 aaKnown RBP eCLIP6.11□□□□□ -1.43
USP54-208ENST00000461520 PSG7Q13046 419 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 ENDOGQ14249 297 aaKnown RBP6.11□□□□□ -1.43
USP54-208ENST00000461520 ZBED5Q49AG3 693 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 TMEM255AQ5JRV8 349 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 DCAF12L2Q5VW00 463 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 ZNF774Q6NX45 483 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 C12orf54Q6X4T0 127 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 ZNF730Q6ZMV8 503 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 TMPRSS11FQ6ZWK6 438 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 RRM2BQ7LG56 351 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 OVCH2Q7RTZ1 564 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 FAM122BQ7Z309 247 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms