RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 PRSS12P56730 875 aa10.11□□□□□ -0.79
USP40-210ENST00000454354 MAB21L1Q13394 359 aa10.11□□□□□ -0.79
USP40-210ENST00000454354 FLOT2Q14254 428 aa10.11□□□□□ -0.79
USP40-210ENST00000454354 SNAI3Q3KNW1 292 aa10.11□□□□□ -0.79
USP40-210ENST00000454354 USP43Q70EL4 1123 aa10.11□□□□□ -0.79
USP40-210ENST00000454354 ZNF771Q7L3S4 317 aaPredicted RBP10.11□□□□□ -0.79
USP40-210ENST00000454354 MRPL21Q7Z2W9 205 aaKnown RBP10.11□□□□□ -0.79
USP40-210ENST00000454354 OR6K6Q8NGW6 343 aa10.11□□□□□ -0.79
USP40-210ENST00000454354 ZNF420Q8TAQ5 688 aaPredicted RBP10.11□□□□□ -0.79
USP40-210ENST00000454354 Q8TCH9 128 aa10.11□□□□□ -0.79
USP40-210ENST00000454354 ZFAND2BQ8WV99 257 aa10.11□□□□□ -0.79
USP40-210ENST00000454354 ERGIC1Q969X5 290 aa10.11□□□□□ -0.79
USP40-210ENST00000454354 SLCO4A1Q96BD0 722 aa10.11□□□□□ -0.79
USP40-210ENST00000454354 SLAMF6Q96DU3 332 aa10.11□□□□□ -0.79
USP40-210ENST00000454354 KCNJ15Q99712 375 aa10.11□□□□□ -0.79
USP40-210ENST00000454354 COPS4Q9BT78 406 aa10.11□□□□□ -0.79
USP40-210ENST00000454354 SLC22A4Q9H015 551 aa10.11□□□□□ -0.79
USP40-210ENST00000454354 OPN4Q9UHM6 478 aa10.11□□□□□ -0.79
USP40-210ENST00000454354 LRCH1Q9Y2L9 728 aa10.11□□□□□ -0.79
USP40-210ENST00000454354 NOP16Q9Y3C1 178 aaKnown RBP10.11□□□□□ -0.79
USP40-210ENST00000454354 LRRC30A6NM36 301 aa10.1□□□□□ -0.79
USP40-210ENST00000454354 CD300LBA8K4G0 201 aa10.1□□□□□ -0.79
USP40-210ENST00000454354 H3BN98 237 aa10.1□□□□□ -0.79
USP40-210ENST00000454354 FKBP6O75344 327 aa10.1□□□□□ -0.79
USP40-210ENST00000454354 PTBP3O95758 552 aaKnown RBP10.1□□□□□ -0.79
USP40-210ENST00000454354 CYB5R3P00387 301 aaPredicted RBP10.1□□□□□ -0.79
USP40-210ENST00000454354 HLA-DPB1P04440 258 aa10.1□□□□□ -0.79
USP40-210ENST00000454354 ZNF12P17014 697 aa10.1□□□□□ -0.79
USP40-210ENST00000454354 PMELP40967 661 aa10.1□□□□□ -0.79
USP40-210ENST00000454354 SEC61A1P61619 476 aaKnown RBP10.1□□□□□ -0.79
USP40-210ENST00000454354 GRB2P62993 217 aaKnown RBP10.1□□□□□ -0.79
USP40-210ENST00000454354 ZNF92Q03936 586 aa10.1□□□□□ -0.79
USP40-210ENST00000454354 GLYATL3Q5SZD4 288 aa10.1□□□□□ -0.79
USP40-210ENST00000454354 RHOUQ7L0Q8 258 aa10.1□□□□□ -0.79
USP40-210ENST00000454354 MOGAT3Q86VF5 341 aa10.1□□□□□ -0.79
USP40-210ENST00000454354 C1orf87Q8N0U7 546 aa10.1□□□□□ -0.79
USP40-210ENST00000454354 IQCF1Q8N6M8 205 aa10.1□□□□□ -0.79
USP40-210ENST00000454354 PAPD5Q8NDF8 572 aaKnown RBP10.1□□□□□ -0.79
USP40-210ENST00000454354 DEFB108BQ8NET1 73 aa10.1□□□□□ -0.79
USP40-210ENST00000454354 OR2AE1Q8NHA4 323 aa10.1□□□□□ -0.79
USP40-210ENST00000454354 RNF133Q8WVZ7 376 aa10.1□□□□□ -0.79
USP40-210ENST00000454354 SPRYD4Q8WW59 207 aaPredicted RBP10.1□□□□□ -0.79
USP40-210ENST00000454354 SPSB4Q96A44 273 aa10.1□□□□□ -0.79
USP40-210ENST00000454354 INTS14Q96SY0 518 aa10.1□□□□□ -0.79
USP40-210ENST00000454354 TOR3AQ9H497 397 aa10.1□□□□□ -0.79
USP40-210ENST00000454354 OCEL1Q9H607 264 aa10.1□□□□□ -0.79
USP40-210ENST00000454354 OPA3Q9H6K4 179 aa10.1□□□□□ -0.79
USP40-210ENST00000454354 C7orf69Q9H7B7 122 aa10.1□□□□□ -0.79
USP40-210ENST00000454354 TMEM165Q9HC07 324 aa10.1□□□□□ -0.79
USP40-210ENST00000454354 MRPL15Q9P015 296 aaKnown RBP10.1□□□□□ -0.79
USP40-210ENST00000454354 PDP1Q9P0J1 537 aaPredicted RBP10.1□□□□□ -0.79
USP40-210ENST00000454354 POMPQ9Y244 141 aa10.1□□□□□ -0.79
USP40-210ENST00000454354 NBEAL1Q6ZS30 2694 aa10.1□□□□□ -0.79
USP40-210ENST00000454354 C5orf63A6NC05 138 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 FAM183AA6NL82 134 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 TRAPPC2LH3BP13 241 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 GNGT2O14610 69 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 XRCC2O43543 280 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 GMDSO60547 372 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 DNAJC8O75937 253 aaPredicted RBP10.09□□□□□ -0.79
USP40-210ENST00000454354 GLCEO94923 617 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 VENTXO95231 258 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 WNT2P09544 360 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 OSMP13725 252 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 ANXA8P13928 327 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 ADRA2CP18825 462 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 PAICSP22234 425 aaKnown RBP10.09□□□□□ -0.79
USP40-210ENST00000454354 SLC15A1P46059 708 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 PRKXP51817 358 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 HILS1P60008 231 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 CBX1P83916 185 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 PAX2Q02962 417 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 EIF2B1Q14232 305 aaKnown RBP10.09□□□□□ -0.79
USP40-210ENST00000454354 TUSC1Q2TAM9 212 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 ZNF404Q494X3 552 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 ESCO2Q56NI9 601 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 SHFQ7M4L6 423 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 DPY19L4Q7Z388 723 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 SPATA24Q86W54 205 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 KLBQ86Z14 1044 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 ERI1Q8IV48 349 aaKnown RBP10.09□□□□□ -0.79
USP40-210ENST00000454354 TIGD4Q8IY51 512 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 HS3ST5Q8IZT8 346 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 NANPQ8TBE9 248 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 ZNF418Q8TF45 676 aaPredicted RBP10.09□□□□□ -0.79
USP40-210ENST00000454354 TMEM246Q9BRR3 403 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 ADAT1Q9BUB4 502 aaKnown RBP10.09□□□□□ -0.79
USP40-210ENST00000454354 YY1AP1Q9H869 796 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 MED20Q9H944 212 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 MMP26Q9NRE1 261 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 DNAJB9Q9UBS3 223 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 MIOXQ9UGB7 285 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 INSIG2Q9Y5U4 225 aa10.09□□□□□ -0.79
USP40-210ENST00000454354 IGHV3-64DA0A0J9YX35 117 aa10.08□□□□□ -0.8
USP40-210ENST00000454354 GGT3PA6NGU5 568 aa10.08□□□□□ -0.8
USP40-210ENST00000454354 PRR23D1E9PI22 279 aaPredicted RBP10.08□□□□□ -0.8
USP40-210ENST00000454354 PRODHO43272 600 aa10.08□□□□□ -0.8
USP40-210ENST00000454354 E2F6O75461 281 aa10.08□□□□□ -0.8
USP40-210ENST00000454354 PRR23D2P0DMB1 279 aaPredicted RBP10.08□□□□□ -0.8
USP40-210ENST00000454354 SLC2A1P11166 492 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms