RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 LDAHQ9H6V9 325 aa10.61□□□□□ -0.71
MSH6-204ENST00000445503 TMEM127O75204 238 aa10.61□□□□□ -0.71
MSH6-204ENST00000445503 ATG12O94817 140 aa10.61□□□□□ -0.71
MSH6-204ENST00000445503 PPT1P50897 306 aa10.61□□□□□ -0.71
MSH6-204ENST00000445503 FOXF1Q12946 379 aa10.61□□□□□ -0.71
MSH6-204ENST00000445503 CATSPERDQ86XM0 798 aa10.61□□□□□ -0.71
MSH6-204ENST00000445503 PLEKHJ1Q9NW61 149 aa10.61□□□□□ -0.71
MSH6-204ENST00000445503 KLHL13Q9P2N7 655 aa10.61□□□□□ -0.71
MSH6-204ENST00000445503 EDARQ9UNE0 448 aa10.61□□□□□ -0.71
MSH6-204ENST00000445503 OBSL1O75147 1896 aa10.61□□□□□ -0.71
MSH6-204ENST00000445503 EPOPA6NHQ4 379 aa10.61□□□□□ -0.71
MSH6-204ENST00000445503 CBR1P16152 277 aa10.61□□□□□ -0.71
MSH6-204ENST00000445503 RAB6AP20340 208 aa10.61□□□□□ -0.71
MSH6-204ENST00000445503 MST1P26927 711 aa10.61□□□□□ -0.71
MSH6-204ENST00000445503 EXOSC6Q5RKV6 272 aaKnown RBP10.61□□□□□ -0.71
MSH6-204ENST00000445503 BATF2Q8N1L9 274 aa10.61□□□□□ -0.71
MSH6-204ENST00000445503 KCNRGQ8N5I3 272 aa10.61□□□□□ -0.71
MSH6-204ENST00000445503 EXD3Q8N9H8 876 aa10.61□□□□□ -0.71
MSH6-204ENST00000445503 ROBO4Q8WZ75 1007 aa10.61□□□□□ -0.71
MSH6-204ENST00000445503 HOXB13Q92826 284 aaPredicted RBP10.61□□□□□ -0.71
MSH6-204ENST00000445503 MRPL38Q96DV4 380 aaKnown RBP10.61□□□□□ -0.71
MSH6-204ENST00000445503 RPS10P5Q9NQ39 176 aa10.61□□□□□ -0.71
MSH6-204ENST00000445503 PRMT8Q9NR22 394 aaPredicted RBP10.61□□□□□ -0.71
MSH6-204ENST00000445503 FAM230AA0A1W2PPH8 454 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 ZNF354AO60765 605 aaPredicted RBP10.6□□□□□ -0.71
MSH6-204ENST00000445503 WDPCPO95876 746 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 IGHG1P01857 330 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 C17orf67Q0P5P2 114 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 SLC25A24Q6NUK1 477 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 C9orf40Q8IXQ3 194 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 SLC25A28Q96A46 364 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 UQCC2Q9BRT2 126 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 VN1R1Q9GZP7 353 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 A0A1W2PP11 408 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 PRR19A6NJB7 356 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 ALG1L2C9J202 215 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 SULT2B1O00204 365 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 ITGB2P05107 769 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 FCGR2AP12318 317 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 FOLR1P15328 257 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 ADH6P28332 368 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 PRSS12P56730 875 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 IAH1Q2TAA2 248 aaPredicted RBP10.6□□□□□ -0.71
MSH6-204ENST00000445503 ZNF684Q5T5D7 378 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 PHF19Q5T6S3 580 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 RAET1LQ5VY80 246 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 OVCH2Q7RTZ1 564 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 OR1L3Q8NH93 324 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 KCNG3Q8TAE7 436 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 ADAT3Q96EY9 351 aaPredicted RBP10.6□□□□□ -0.71
MSH6-204ENST00000445503 CHST11Q9NPF2 352 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 SLC17A5Q9NRA2 495 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 RASL12Q9NYN1 266 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 SOCS1O15524 211 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 SNRNP70P08621 437 aaKnown RBP10.6□□□□□ -0.71
MSH6-204ENST00000445503 PET100P0DJ07 73 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 GABREP78334 506 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 LRRC75AQ8NAA5 344 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 RNASE11Q8TAA1 199 aaKnown RBP10.6□□□□□ -0.71
MSH6-204ENST00000445503 STT3BQ8TCJ2 826 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 ZC3H10Q96K80 434 aaKnown RBP10.6□□□□□ -0.71
MSH6-204ENST00000445503 SHARPINQ9H0F6 387 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 SLC22A11Q9NSA0 550 aa10.6□□□□□ -0.71
MSH6-204ENST00000445503 KNTC1P50748 2209 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 RER1O15258 196 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 TXNDC12O95881 172 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 HPP00738 406 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 FGF2P09038 288 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 POU2F2P09086 479 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 CTRB1P17538 263 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 CD80P33681 288 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 SCAND1P57086 179 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 PPIAP62937 165 aaKnown RBP10.59□□□□□ -0.71
MSH6-204ENST00000445503 PDZK1IP1Q13113 114 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 CTRB2Q6GPI1 263 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 NPAS1Q99742 590 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 CRB3Q9BUF7 120 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 EXOSC3Q9NQT5 275 aaKnown RBP10.59□□□□□ -0.71
MSH6-204ENST00000445503 PLEK2Q9NYT0 353 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 CCDC163A0A0D9SF12 145 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 SNAPINO95295 136 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 OR3A4PP47883 348 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 PNLIPRP2P54317 469 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 CLDN17P56750 224 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 TERB2Q8NHR7 220 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 ZNF524Q96C55 264 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 C20orf24Q9BUV8 137 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 REG4Q9BYZ8 158 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 TNFSF18Q9UNG2 199 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 CHD7Q9P2D1 2997 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 TRAV14DV4A0A0A6YYC5 116 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 HSPB2A8KAH6 182 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 VSIG8P0DPA2 414 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 GLRA1P23415 457 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 SSBP1Q04837 148 aaKnown RBP10.59□□□□□ -0.71
MSH6-204ENST00000445503 INPP5JQ15735 1006 aaPredicted RBP10.59□□□□□ -0.71
MSH6-204ENST00000445503 HSPB2Q16082 182 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 GUCA2BQ16661 112 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 SPIN3Q5JUX0 258 aa10.59□□□□□ -0.71
MSH6-204ENST00000445503 OR13C8Q8NGS7 320 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms