RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 ZNF766Q5HY98 468 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 NSUN5P2Q63ZY6 315 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 LIPHQ8WWY8 451 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 GALMQ96C23 342 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 ZBTB32Q9Y2Y4 487 aaPredicted RBP6.56□□□□□ -1.36
VPS53-204ENST00000437048 KIAA1217Q5T5P2 1943 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 DRD1P21728 446 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 RAB9AP51151 201 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 H1FNTQ75WM6 255 aaPredicted RBP6.56□□□□□ -1.36
VPS53-204ENST00000437048 CTU1Q7Z7A3 348 aaKnown RBP6.56□□□□□ -1.36
VPS53-204ENST00000437048 CMTM8Q8IZV2 173 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 DIO2Q92813 273 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 APIPQ96GX9 242 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 POM121CA8CG34 1229 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 MPTX1A8MV57 137 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 ADRA1AP35348 466 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 AKR1C3P42330 323 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 SMIM21Q3B7S5 101 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 ZNF789Q5FWF6 425 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 TMEM151BQ8IW70 566 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 OR4D6Q8NGJ1 314 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 TEAD3Q99594 435 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 PCDHGA9Q9Y5G4 932 aaKnown RBP6.56□□□□□ -1.36
VPS53-204ENST00000437048 A0A1W2PPK0 400 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 TNFRSF10CO14798 259 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 SNRPBP14678 240 aaKnown RBP6.56□□□□□ -1.36
VPS53-204ENST00000437048 P2RY1P47900 373 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 NFATC4Q14934 902 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 GIMAP2Q9UG22 337 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 SHANK1Q9Y566 2161 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 PCNX1Q96RV3 2341 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 SORBS2O94875 1100 aaKnown RBP6.56□□□□□ -1.36
VPS53-204ENST00000437048 IFI6P09912 130 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 ARIH2OSQ8N7S6 290 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 CRYGNQ8WXF5 182 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 BCL2L2Q92843 193 aaPredicted RBP6.56□□□□□ -1.36
VPS53-204ENST00000437048 ZIC5Q96T25 663 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 AAMDCQ9H7C9 122 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 TMEM9BQ9NQ34 198 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 THYN1Q9P016 225 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 ACTL6AO96019 429 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 SLC2A1P11166 492 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 GNG4P50150 75 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 CLEC12BQ2HXU8 276 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 HNRNPA1L2Q32P51 320 aaKnown RBP6.56□□□□□ -1.36
VPS53-204ENST00000437048 HTR3DQ70Z44 454 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 ZNF551Q7Z340 670 aaPredicted RBP6.56□□□□□ -1.36
VPS53-204ENST00000437048 PACRGQ96M98 296 aaPredicted RBP6.56□□□□□ -1.36
VPS53-204ENST00000437048 TP53RKQ96S44 253 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 ADGRL4Q9HBW9 690 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 ALKBH4Q9NXW9 302 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 KIAA1456Q9P272 454 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 A0A1B0GTQ1 180 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 PCSK6P29122 969 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 OR2G2Q8NGZ5 317 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 MZB1Q8WU39 189 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 MUCL1Q96DR8 90 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 SPATA6Q9NWH7 488 aaPredicted RBP6.56□□□□□ -1.36
VPS53-204ENST00000437048 LOC102723971A0A1B0GUV8 181 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 LINC01549A6NIU2 74 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 CCNOP22674 350 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 EPHA8P29322 1005 aaPredicted RBP6.56□□□□□ -1.36
VPS53-204ENST00000437048 CSF2RBP32927 897 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 HMGN2P46Q86SG4 172 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 GPR137Q96N19 417 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 TRBV4-1A0A0J9YWV2 114 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 SCGB1C2P0DMR2 95 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 ZNF8P17098 575 aaPredicted RBP6.55□□□□□ -1.36
VPS53-204ENST00000437048 ACVRL1P37023 503 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 DNLZQ5SXM8 178 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 H1FOOQ8IZA3 346 aaPredicted RBP6.55□□□□□ -1.36
VPS53-204ENST00000437048 ZNF687Q8N1G0 1237 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 MARCH4Q9P2E8 410 aaPredicted RBP6.55□□□□□ -1.36
VPS53-204ENST00000437048 METTL1Q9UBP6 276 aaKnown RBP6.55□□□□□ -1.36
VPS53-204ENST00000437048 CTNSO60931 367 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 WDR1O75083 606 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 HLA-DQA1P01909 254 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 EPHA1P21709 976 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 PAX5Q02548 391 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 RBPJQ06330 500 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 SECTM1Q8WVN6 248 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 REEP6Q96HR9 211 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 STARD5Q9NSY2 213 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 TRAPPC2LQ9UL33 140 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 TMED7Q9Y3B3 224 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 ZNF593O00488 134 aaPredicted RBP6.55□□□□□ -1.36
VPS53-204ENST00000437048 GABRR1P24046 479 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 ELAVL1Q15717 326 aaKnown RBP6.55□□□□□ -1.36
VPS53-204ENST00000437048 RAB6CQ53S08 254 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 LRRTM1Q86UE6 522 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 RIMKLAQ8IXN7 391 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 GAS2L1Q99501 681 aaPredicted RBP6.55□□□□□ -1.36
VPS53-204ENST00000437048 OCEL1Q9H607 264 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 SLC2A8Q9NY64 477 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 HDGFL3Q9Y3E1 203 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 C7orf66A4D0T2 115 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 C17orf105B2RV13 164 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 HPP00738 406 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 BPIFA4PQ86YQ2 179 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 A0A1W2PN81 502 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 90.8 ms