RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 OR1J1Q8NGS3 322 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 FAM3CQ92520 227 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 MARS2Q96GW9 593 aaKnown RBP9.54□□□□□ -0.88
USP54-204ENST00000422491 RTBDNQ9BSG5 229 aaPredicted RBP9.54□□□□□ -0.88
USP54-204ENST00000422491 CHRDQ9H2X0 955 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 PRDM13Q9H4Q3 707 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 FGF22Q9HCT0 170 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 G6PC2Q9NQR9 355 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 CUTCQ9NTM9 273 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 UFSP2Q9NUQ7 469 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 AMDHD2Q9Y303 409 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 EMC9Q9Y3B6 208 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 R4GMQ9 66 aa9.54□□□□□ -0.88
USP54-204ENST00000422491 IGLV1-36A0A0B4J1U3 117 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 C2orf74A8MZ97 194 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 JTBO76095 146 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 TSPAN15O95858 294 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 IFNA17P01571 189 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 RPS2P15880 293 aaKnown RBP9.53□□□□□ -0.88
USP54-204ENST00000422491 ZNF708P17019 499 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 PI3P19957 117 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 CENPAP49450 140 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 RAB38P57729 211 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 S100A10P60903 97 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 BTG2P78543 158 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 FAM3AP98173 230 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 INSM1Q01101 510 aaPredicted RBP9.53□□□□□ -0.88
USP54-204ENST00000422491 SKP2Q13309 424 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 CNKSR3Q6P9H4 555 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 HEPN1Q6WQI6 88 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 ARRDC1Q8N5I2 433 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 COMMD1Q8N668 190 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 ZNF383Q8NA42 475 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 PNLDC1Q8NA58 520 aaKnown RBP9.53□□□□□ -0.88
USP54-204ENST00000422491 OR9K2Q8NGE7 335 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 SLAMF9Q96A28 289 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 RERGQ96A58 199 aaPredicted RBP9.53□□□□□ -0.88
USP54-204ENST00000422491 KLHDC3Q9BQ90 382 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 NUDT16L1Q9BRJ7 211 aaKnown RBP9.53□□□□□ -0.88
USP54-204ENST00000422491 METTL8Q9H825 291 aaKnown RBP9.53□□□□□ -0.88
USP54-204ENST00000422491 FBXL17Q9UF56 701 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 PRSS37A4D1T9 235 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 BPNT1O95861 308 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 IGFALSP35858 605 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 CCR4P51679 360 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 FIP1L1Q6UN15 594 aaKnown RBP9.53□□□□□ -0.88
USP54-204ENST00000422491 ZNF574Q6ZN55 896 aaPredicted RBP9.53□□□□□ -0.88
USP54-204ENST00000422491 NUP54Q7Z3B4 507 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 KDM8Q8N371 416 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 OR52N4Q8NGI2 321 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 OR52N5Q8NH56 324 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 AKR7LQ8NHP1 331 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 ZDHHC12Q96GR4 267 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 PARP12Q9H0J9 701 aaKnown RBP9.53□□□□□ -0.88
USP54-204ENST00000422491 HDGFL3Q9Y3E1 203 aa9.53□□□□□ -0.88
USP54-204ENST00000422491 HIDE1A8MVS5 230 aa9.52□□□□□ -0.88
USP54-204ENST00000422491 UMAD1C9J7I0 102 aa9.52□□□□□ -0.88
USP54-204ENST00000422491 XKRYO14609 159 aa9.52□□□□□ -0.88
USP54-204ENST00000422491 SLC16A7O60669 478 aa9.52□□□□□ -0.88
USP54-204ENST00000422491 OR6A2O95222 327 aa9.52□□□□□ -0.88
USP54-204ENST00000422491 APBB3O95704 486 aa9.52□□□□□ -0.88
USP54-204ENST00000422491 TBC1D3HP0C7X1 549 aa9.52□□□□□ -0.88
USP54-204ENST00000422491 CTLA4P16410 223 aa9.52□□□□□ -0.88
USP54-204ENST00000422491 FPR2P25090 351 aa9.52□□□□□ -0.88
USP54-204ENST00000422491 RPL12P30050 165 aaKnown RBP9.52□□□□□ -0.88
USP54-204ENST00000422491 RPS23P62266 143 aaKnown RBP9.52□□□□□ -0.88
USP54-204ENST00000422491 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.52□□□□□ -0.88
USP54-204ENST00000422491 ZNF565Q8N9K5 539 aa9.52□□□□□ -0.88
USP54-204ENST00000422491 ZNF519Q8TB69 540 aa9.52□□□□□ -0.88
USP54-204ENST00000422491 SLC25A43Q8WUT9 341 aaPredicted RBP9.52□□□□□ -0.88
USP54-204ENST00000422491 SCARF2Q96GP6 870 aaPredicted RBP9.52□□□□□ -0.88
USP54-204ENST00000422491 GSKIPQ9P0R6 139 aa9.52□□□□□ -0.88
USP54-204ENST00000422491 LOC101059948A0A1B0GTJ6 334 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 A0A1B0GV90 55 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 C11orf98E9PRG8 122 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 SCGNO76038 276 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 PVRP15151 417 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 HSD11B1P28845 292 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 TM4SF4P48230 202 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 KIAA0141Q14154 515 aaPredicted RBP9.52□□□□□ -0.89
USP54-204ENST00000422491 PLPP4Q5VZY2 271 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 MED25Q71SY5 747 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 GRASPQ7Z6J2 395 aaPredicted RBP9.52□□□□□ -0.89
USP54-204ENST00000422491 OR10H5Q8NGA6 315 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 C16orf52Q8NHV5 167 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 RHOVQ96L33 236 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 NICN1Q9BSH3 213 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 CNTNAP3Q9BZ76 1288 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 S1PR5Q9H228 398 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 OR52A1Q9UKL2 312 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 TRBV23OR9-2A0A075B6M9 112 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 TMEM14DPA8MWL7 114 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 NME2P1O60361 137 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 LMO1P25800 156 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 GDI1P31150 447 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 VIPR2P41587 438 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 ACTR1BP42025 376 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 GPR3P46089 330 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 CLDN6P56747 220 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 TMEM33P57088 247 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 147.2 ms