RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 OR2D2Q9H210 308 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 BOLA1Q9Y3E2 137 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 DOCK7Q96N67 2140 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 OPRK1P41145 380 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 TMEM251Q8N6I4 163 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 EXD3Q8N9H8 876 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 OPALINQ96PE5 141 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 A0A0A6YYC8 382 aaPredicted RBP12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 H7C2G1 150 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 I3L1I5 382 aaPredicted RBP12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 ANKRD16Q6P6B7 361 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 LIPIQ6XZB0 460 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 UMODL1-AS1Q8N2C9 162 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 TMEM178AQ8NBL3 297 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 SLC35B3Q9H1N7 401 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 POLR2AP24928 1970 aaKnown RBP12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 SLC10A3P09131 477 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 OR1D5P58170 312 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 TMEM241Q24JQ0 296 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 CALHM3Q86XJ0 350 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 DND1Q8IYX4 353 aaKnown RBP12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 NEIL1Q96FI4 390 aaPredicted RBP12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 SGK494Q96LW2 274 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 GPR87Q9BY21 358 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 FKBP11Q9NYL4 201 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 CTSFQ9UBX1 484 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 UBR2Q8IWV8 1755 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 MEIKINA0A087WXM9 373 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 ZC3H12DA2A288 527 aaKnown RBP12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 TNFRSF10CO14798 259 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 MELTFP08582 738 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 PTHLHP12272 177 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 ARR3P36575 388 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 KIR2DL1P43626 348 aaPredicted RBP12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 KIR2DL2P43627 348 aaPredicted RBP12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 METAP1P53582 386 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 GLIS1Q8NBF1 620 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 RTN4IP1Q8WWV3 396 aaPredicted RBP12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 FAM210BQ96KR6 192 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 ANXA10Q9UJ72 324 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 DHRS7CA6NNS2 312 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 MT-ATP6P00846 226 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 LEXMQ3ZCV2 418 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 TCEAL8Q8IYN2 117 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 NRG4Q8WWG1 115 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 ZPBPQ9BS86 351 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 NUMBLQ9Y6R0 609 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 CDRT15L2A8MXV6 281 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 ONECUT2O95948 504 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 HNRNPA1P09651 372 aaKnown RBP eCLIP12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 NAT6Q93015 286 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 RAB24Q969Q5 203 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 JAM3Q9BX67 310 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 TXNIPQ9H3M7 391 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 SLC7A10Q9NS82 523 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 PLIN4Q96Q06 1357 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 NWD2Q9ULI1 1742 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 CORTO00230 105 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 SNRPGP62308 76 aaKnown RBP12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 SPAG8Q99932 426 aaPredicted RBP12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 HDAC8Q9BY41 377 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 ADGRL4Q9HBW9 690 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 FAM208AQ9UK61 1670 aaKnown RBP12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 SNRPGP15A8MWD9 76 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 SELENOFO60613 162 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 P2RY2P41231 377 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 ANAPC16Q96DE5 110 aa12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 ADAT3Q96EY9 351 aaPredicted RBP12.18□□□□□ -0.46
CCDC88A-204ENST00000413716 DUXBA0A1W2PPF3 345 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 ANKRD61A6NGH8 418 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 G3V2L1 256 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 PPP1CAP62136 330 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 HNRNPA1L2Q32P51 320 aaKnown RBP12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 OR5AS1Q8N127 324 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 ZNF680Q8NEM1 530 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 HGDQ93099 445 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 SLCO4A1Q96BD0 722 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 NDRG4Q9ULP0 352 aaKnown RBP12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 MED1Q15648 1581 aaPredicted RBP12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 SERPINE3A8MV23 424 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 GLRA1P23415 457 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 ZNF816Q0VGE8 651 aaPredicted RBP12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 CBLL1Q75N03 491 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 LYG2Q86SG7 212 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 OR8A1Q8NGG7 326 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 NXPE3Q969Y0 559 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 TAS2R4Q9NYW5 299 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 MYADML2A6NDP7 307 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 B4E171 279 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 ACOT8O14734 319 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 UTS2O95399 124 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 SMIM6P0DI80 62 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 RELBQ01201 579 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 OR52N1Q8NH53 320 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 PACRGQ96M98 296 aaPredicted RBP12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 TEAD3Q99594 435 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 SPINK4O60575 86 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 SLC38A5Q8WUX1 472 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 SPACA9Q96E40 222 aaPredicted RBP12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 FAHD2AQ96GK7 314 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms