RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 CXXC5Q7LFL8 322 aaKnown RBP12.51□□□□□ -0.41
LIMS4-201ENST00000413601 SHFQ7M4L6 423 aa12.51□□□□□ -0.41
LIMS4-201ENST00000413601 PEG10Q86TG7 708 aaKnown RBP12.51□□□□□ -0.41
LIMS4-201ENST00000413601 PARP8Q8N3A8 854 aa12.51□□□□□ -0.41
LIMS4-201ENST00000413601 RNF133Q8WVZ7 376 aa12.51□□□□□ -0.41
LIMS4-201ENST00000413601 GCM1Q9NP62 436 aa12.51□□□□□ -0.41
LIMS4-201ENST00000413601 KRT84Q9NSB2 600 aa12.51□□□□□ -0.41
LIMS4-201ENST00000413601 TMEFF2Q9UIK5 374 aaPredicted RBP12.51□□□□□ -0.41
LIMS4-201ENST00000413601 NPTNQ9Y639 398 aa12.51□□□□□ -0.41
LIMS4-201ENST00000413601 JMJD1CQ15652 2540 aa12.51□□□□□ -0.41
LIMS4-201ENST00000413601 IGHV2-5P01817 119 aa12.5□□□□□ -0.41
LIMS4-201ENST00000413601 MSMBP08118 114 aa12.5□□□□□ -0.41
LIMS4-201ENST00000413601 SBK2P0C263 348 aa12.5□□□□□ -0.41
LIMS4-201ENST00000413601 FCGR1AP12314 374 aa12.5□□□□□ -0.41
LIMS4-201ENST00000413601 HNF1AP20823 631 aa12.5□□□□□ -0.41
LIMS4-201ENST00000413601 SLC2A5P22732 501 aa12.5□□□□□ -0.41
LIMS4-201ENST00000413601 HSD11B1P28845 292 aa12.5□□□□□ -0.41
LIMS4-201ENST00000413601 EPHA2P29317 976 aa12.5□□□□□ -0.41
LIMS4-201ENST00000413601 NAA10P41227 235 aaPredicted RBP12.5□□□□□ -0.41
LIMS4-201ENST00000413601 CX3CR1P49238 355 aa12.5□□□□□ -0.41
LIMS4-201ENST00000413601 ESRRGP62508 458 aa12.5□□□□□ -0.41
LIMS4-201ENST00000413601 APOFQ13790 326 aa12.5□□□□□ -0.41
LIMS4-201ENST00000413601 GLCCI1Q86VQ1 547 aa12.5□□□□□ -0.41
LIMS4-201ENST00000413601 ZDHHC13Q8IUH4 622 aa12.5□□□□□ -0.41
LIMS4-201ENST00000413601 THEM6Q8WUY1 208 aa12.5□□□□□ -0.41
LIMS4-201ENST00000413601 SPRYD4Q8WW59 207 aaPredicted RBP12.5□□□□□ -0.41
LIMS4-201ENST00000413601 RAB39BQ96DA2 213 aa12.5□□□□□ -0.41
LIMS4-201ENST00000413601 MEGF10Q96KG7 1140 aa12.5□□□□□ -0.41
LIMS4-201ENST00000413601 SIGLEC11Q96RL6 698 aa12.5□□□□□ -0.41
LIMS4-201ENST00000413601 GAL3ST1Q99999 423 aa12.5□□□□□ -0.41
LIMS4-201ENST00000413601 REPIN1Q9BWE0 567 aaKnown RBP12.5□□□□□ -0.41
LIMS4-201ENST00000413601 SEMA6AQ9H2E6 1030 aa12.5□□□□□ -0.41
LIMS4-201ENST00000413601 HIF1ANQ9NWT6 349 aa12.5□□□□□ -0.41
LIMS4-201ENST00000413601 UBAP1Q9NZ09 502 aa12.5□□□□□ -0.41
LIMS4-201ENST00000413601 A0A1B0GWJ7 208 aa12.49□□□□□ -0.41
LIMS4-201ENST00000413601 GGT3PA6NGU5 568 aa12.49□□□□□ -0.41
LIMS4-201ENST00000413601 CD300LBA8K4G0 201 aa12.49□□□□□ -0.41
LIMS4-201ENST00000413601 M0R129 80 aa12.49□□□□□ -0.41
LIMS4-201ENST00000413601 TBX1O43435 398 aa12.49□□□□□ -0.41
LIMS4-201ENST00000413601 PRKYO43930 277 aa12.49□□□□□ -0.41
LIMS4-201ENST00000413601 IFNA2P01563 188 aa12.49□□□□□ -0.41
LIMS4-201ENST00000413601 IGHV2-70P01814 119 aa12.49□□□□□ -0.41
LIMS4-201ENST00000413601 ANXA2P07355 339 aaKnown RBP12.49□□□□□ -0.41
LIMS4-201ENST00000413601 SRD5A1P18405 259 aa12.49□□□□□ -0.41
LIMS4-201ENST00000413601 SRP9P49458 86 aaKnown RBP12.49□□□□□ -0.41
LIMS4-201ENST00000413601 MMP16P51512 607 aa12.49□□□□□ -0.41
LIMS4-201ENST00000413601 SLC35D3Q5M8T2 416 aa12.49□□□□□ -0.41
LIMS4-201ENST00000413601 KDM4DQ6B0I6 523 aa12.49□□□□□ -0.41
LIMS4-201ENST00000413601 OR51F2Q8NH61 342 aa12.49□□□□□ -0.41
LIMS4-201ENST00000413601 OTOSQ8NHW6 89 aa12.49□□□□□ -0.41
LIMS4-201ENST00000413601 ZNF420Q8TAQ5 688 aaPredicted RBP12.49□□□□□ -0.41
LIMS4-201ENST00000413601 PYDC1Q8WXC3 89 aa12.49□□□□□ -0.41
LIMS4-201ENST00000413601 TMEM186Q96B77 213 aa12.49□□□□□ -0.41
LIMS4-201ENST00000413601 GABARAPL1Q9H0R8 117 aa12.49□□□□□ -0.41
LIMS4-201ENST00000413601 TOR3AQ9H497 397 aa12.49□□□□□ -0.41
LIMS4-201ENST00000413601 DNAJC27Q9NZQ0 273 aa12.49□□□□□ -0.41
LIMS4-201ENST00000413601 KLHDC2Q9Y2U9 406 aa12.49□□□□□ -0.41
LIMS4-201ENST00000413601 DOCK11Q5JSL3 2073 aa12.49□□□□□ -0.41
LIMS4-201ENST00000413601 PLPP2O43688 288 aa12.48□□□□□ -0.41
LIMS4-201ENST00000413601 LYNP07948 512 aa12.48□□□□□ -0.41
LIMS4-201ENST00000413601 H2BFMP0C1H6 154 aa12.48□□□□□ -0.41
LIMS4-201ENST00000413601 ANPEPP15144 967 aa12.48□□□□□ -0.41
LIMS4-201ENST00000413601 CA6P23280 308 aa12.48□□□□□ -0.41
LIMS4-201ENST00000413601 OPRL1P41146 370 aa12.48□□□□□ -0.41
LIMS4-201ENST00000413601 HCCSP53701 268 aa12.48□□□□□ -0.41
LIMS4-201ENST00000413601 ZNF121P58317 390 aaPredicted RBP12.48□□□□□ -0.41
LIMS4-201ENST00000413601 ZMYND11Q15326 602 aa12.48□□□□□ -0.41
LIMS4-201ENST00000413601 FAM57BQ71RH2 274 aa12.48□□□□□ -0.41
LIMS4-201ENST00000413601 RHOUQ7L0Q8 258 aa12.48□□□□□ -0.41
LIMS4-201ENST00000413601 MOGAT3Q86VF5 341 aa12.48□□□□□ -0.41
LIMS4-201ENST00000413601 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.48□□□□□ -0.41
LIMS4-201ENST00000413601 ZNF454Q8N9F8 522 aa12.48□□□□□ -0.41
LIMS4-201ENST00000413601 CENPNQ96H22 339 aaPredicted RBP12.48□□□□□ -0.41
LIMS4-201ENST00000413601 TEAD3Q99594 435 aa12.48□□□□□ -0.41
LIMS4-201ENST00000413601 BRD7Q9NPI1 651 aa12.48□□□□□ -0.41
LIMS4-201ENST00000413601 CUBNO60494 3623 aa12.47□□□□□ -0.41
LIMS4-201ENST00000413601 TRAV20A0A0B4J274 112 aa12.47□□□□□ -0.41
LIMS4-201ENST00000413601 CCDC182A6NF36 153 aa12.47□□□□□ -0.41
LIMS4-201ENST00000413601 SAC3D1A6NKF1 404 aa12.47□□□□□ -0.41
LIMS4-201ENST00000413601 ZAR1LA6NP61 321 aa12.47□□□□□ -0.41
LIMS4-201ENST00000413601 TMEM178BH3BS89 294 aa12.47□□□□□ -0.41
LIMS4-201ENST00000413601 XRCC2O43543 280 aa12.47□□□□□ -0.41
LIMS4-201ENST00000413601 CYB5R3P00387 301 aaPredicted RBP12.47□□□□□ -0.41
LIMS4-201ENST00000413601 APOC1P02654 83 aa12.47□□□□□ -0.41
LIMS4-201ENST00000413601 BTG1P62324 171 aa12.47□□□□□ -0.41
LIMS4-201ENST00000413601 MAB21L1Q13394 359 aa12.47□□□□□ -0.41
LIMS4-201ENST00000413601 KPNB1Q14974 876 aaKnown RBP12.47□□□□□ -0.41
LIMS4-201ENST00000413601 OR8G1Q15617 311 aa12.47□□□□□ -0.41
LIMS4-201ENST00000413601 TIGD6Q17RP2 521 aa12.47□□□□□ -0.41
LIMS4-201ENST00000413601 SLX4IPQ5VYV7 408 aa12.47□□□□□ -0.41
LIMS4-201ENST00000413601 PRSS45Q7RTY3 260 aa12.47□□□□□ -0.41
LIMS4-201ENST00000413601 BCDIN3DQ7Z5W3 292 aaKnown RBP12.47□□□□□ -0.41
LIMS4-201ENST00000413601 LRRC28Q86X40 367 aaPredicted RBP12.47□□□□□ -0.41
LIMS4-201ENST00000413601 TCEANCQ8N8B7 351 aa12.47□□□□□ -0.41
LIMS4-201ENST00000413601 OR56B2PQ8NGI1 322 aa12.47□□□□□ -0.41
LIMS4-201ENST00000413601 DVL3Q92997 716 aaPredicted RBP12.47□□□□□ -0.41
LIMS4-201ENST00000413601 SGK3Q96BR1 496 aa12.47□□□□□ -0.41
LIMS4-201ENST00000413601 MDFIQ99750 246 aa12.47□□□□□ -0.41
LIMS4-201ENST00000413601 CIB1Q99828 191 aa12.47□□□□□ -0.41
LIMS4-201ENST00000413601 ZNF319Q9P2F9 582 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms