RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 C10orf53Q8N6V4 93 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 MFSD8Q8NHS3 518 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 PHF21AQ96BD5 680 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 SLC25A36Q96CQ1 311 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 PIK3IP1Q96FE7 263 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 ARL5BQ96KC2 179 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 WFIKKN1Q96NZ8 548 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 POLR2J2Q9GZM3 115 aaKnown RBP5.46□□□□□ -1.54
USP40-202ENST00000409945 POLR2J3Q9H1A7 115 aaKnown RBP5.46□□□□□ -1.54
USP40-202ENST00000409945 KAT8Q9H7Z6 458 aaKnown RBP5.46□□□□□ -1.54
USP40-202ENST00000409945 NANOGQ9H9S0 305 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 SLC52A3Q9NQ40 469 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 ACTR3BQ9P1U1 418 aa5.46□□□□□ -1.54
USP40-202ENST00000409945 LRBAP50851 2863 aa5.45□□□□□ -1.54
USP40-202ENST00000409945 KIAA1549Q9HCM3 1950 aa5.45□□□□□ -1.54
USP40-202ENST00000409945 TRAV36DV7A0A075B6V5 113 aa5.45□□□□□ -1.54
USP40-202ENST00000409945 NME4O00746 187 aa5.45□□□□□ -1.54
USP40-202ENST00000409945 DENRO43583 198 aaKnown RBP5.45□□□□□ -1.54
USP40-202ENST00000409945 PAHP00439 452 aa5.45□□□□□ -1.54
USP40-202ENST00000409945 LYNP07948 512 aa5.45□□□□□ -1.54
USP40-202ENST00000409945 MAPK11Q15759 364 aa5.45□□□□□ -1.54
USP40-202ENST00000409945 STK11Q15831 433 aa5.45□□□□□ -1.54
USP40-202ENST00000409945 ZNF613Q6PF04 617 aa5.45□□□□□ -1.54
USP40-202ENST00000409945 TTC33Q6PID6 262 aaPredicted RBP5.45□□□□□ -1.54
USP40-202ENST00000409945 TFAP2EQ6VUC0 442 aa5.45□□□□□ -1.54
USP40-202ENST00000409945 STAC2Q6ZMT1 411 aa5.45□□□□□ -1.54
USP40-202ENST00000409945 CREB3L2Q70SY1 520 aa5.45□□□□□ -1.54
USP40-202ENST00000409945 BHLHA15Q7RTS1 189 aaPredicted RBP5.45□□□□□ -1.54
USP40-202ENST00000409945 AAED1Q7RTV5 226 aa5.45□□□□□ -1.54
USP40-202ENST00000409945 C16orf82Q7Z2V1 217 aa5.45□□□□□ -1.54
USP40-202ENST00000409945 NUFIP2Q7Z417 695 aaKnown RBP5.45□□□□□ -1.54
USP40-202ENST00000409945 MSRB3Q8IXL7 192 aa5.45□□□□□ -1.54
USP40-202ENST00000409945 OR2T12Q8NG77 320 aa5.45□□□□□ -1.54
USP40-202ENST00000409945 OR5M8Q8NGP6 311 aa5.45□□□□□ -1.54
USP40-202ENST00000409945 HIST1H2ACQ93077 130 aa5.45□□□□□ -1.54
USP40-202ENST00000409945 MS4A10Q96PG2 267 aa5.45□□□□□ -1.54
USP40-202ENST00000409945 RBM14Q96PK6 669 aaKnown RBP5.45□□□□□ -1.54
USP40-202ENST00000409945 MCHR1Q99705 422 aa5.45□□□□□ -1.54
USP40-202ENST00000409945 C8orf4Q9NR00 106 aa5.45□□□□□ -1.54
USP40-202ENST00000409945 FAIMQ9NVQ4 179 aa5.45□□□□□ -1.54
USP40-202ENST00000409945 ARMC1Q9NVT9 282 aa5.45□□□□□ -1.54
USP40-202ENST00000409945 TAS2R16Q9NYV7 291 aa5.45□□□□□ -1.54
USP40-202ENST00000409945 DCHS2Q6V1P9 2916 aa5.45□□□□□ -1.54
USP40-202ENST00000409945 A0A1B0GWA3 101 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 DHRS12A0PJE2 317 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 ELOVL7A1L3X0 281 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 CYSRT1A8MQ03 144 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 ARHGEF9O43307 516 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 TXNL1O43396 289 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 BCAS1O75363 584 aaPredicted RBP5.44□□□□□ -1.54
USP40-202ENST00000409945 MFN2O95140 757 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 AKR7A3O95154 331 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 LGI1O95970 557 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 C1QCP02747 245 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 LIPFP07098 398 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 FAM106CPP0CH98 169 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 UMPSP11172 480 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 ACHEP22303 614 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 RPS5P46782 204 aaKnown RBP5.44□□□□□ -1.54
USP40-202ENST00000409945 ALDH3A2P51648 485 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 OR1Q1Q15612 314 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 TIMM23BQ5SRD1 257 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 IQCF1Q8N6M8 205 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 SMYD1Q8NB12 490 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 OR6S1Q8NH40 331 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 POP5Q969H6 163 aaKnown RBP5.44□□□□□ -1.54
USP40-202ENST00000409945 S100PBPQ96BU1 408 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 DNAJA3Q96EY1 480 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 ZNF300Q96RE9 604 aaPredicted RBP5.44□□□□□ -1.54
USP40-202ENST00000409945 PKP2Q99959 881 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 KCTD14Q9BQ13 255 aaPredicted RBP5.44□□□□□ -1.54
USP40-202ENST00000409945 KCNS3Q9BQ31 491 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 KLHDC3Q9BQ90 382 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 FAM192AQ9GZU8 254 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 IKZF5Q9H5V7 419 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 Q9N2K0 584 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 B3GAT2Q9NPZ5 323 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 CMTM6Q9NX76 183 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 PTTG2Q9NZH5 202 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 MGAT4BQ9UQ53 548 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 MPDZO75970 2070 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 TRAPPC13A5PLN9 417 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 ZNF716A6NP11 495 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 FAM220BPB1ANY3 271 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 ARPC2O15144 300 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 CHP2O43745 196 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 MTRF1O75570 445 aaKnown RBP5.44□□□□□ -1.54
USP40-202ENST00000409945 MT-ATP6P00846 226 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 PRG2P13727 222 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 HOXB6P17509 224 aaKnown RBP5.44□□□□□ -1.54
USP40-202ENST00000409945 MAPK3P27361 379 aaPredicted RBP5.44□□□□□ -1.54
USP40-202ENST00000409945 NPY4RP50391 375 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 ART1P52961 327 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 TAS2R41P59536 307 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 H3F3AP84243 136 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 EGR4Q05215 589 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 PLA2G7Q13093 441 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 NPTX1Q15818 432 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 LRRC23Q53EV4 343 aaPredicted RBP5.44□□□□□ -1.54
USP40-202ENST00000409945 PAMR1Q6UXH9 720 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms