RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 ULBP2Q9BZM5 246 aa11.77□□□□□ -0.53
COL6A3-206ENST00000409809 PTPRZ1P23471 2315 aaPredicted RBP11.77□□□□□ -0.53
COL6A3-206ENST00000409809 MPDZO75970 2070 aa11.77□□□□□ -0.53
COL6A3-206ENST00000409809 TCF21O43680 179 aa11.77□□□□□ -0.53
COL6A3-206ENST00000409809 ICAM2P13598 275 aa11.77□□□□□ -0.53
COL6A3-206ENST00000409809 CD82P27701 267 aa11.77□□□□□ -0.53
COL6A3-206ENST00000409809 SLC35G1Q2M3R5 365 aa11.77□□□□□ -0.53
COL6A3-206ENST00000409809 DLEU7Q6UYE1 221 aa11.77□□□□□ -0.53
COL6A3-206ENST00000409809 SNX22Q96L94 193 aa11.77□□□□□ -0.53
COL6A3-206ENST00000409809 UTP23Q9BRU9 249 aaKnown RBP11.77□□□□□ -0.53
COL6A3-206ENST00000409809 ACER3Q9NUN7 267 aa11.77□□□□□ -0.53
COL6A3-206ENST00000409809 HIST1H1CP16403 213 aaKnown RBP11.77□□□□□ -0.53
COL6A3-206ENST00000409809 CDK5R1Q15078 307 aa11.77□□□□□ -0.53
COL6A3-206ENST00000409809 TRMT12Q53H54 448 aaKnown RBP11.77□□□□□ -0.53
COL6A3-206ENST00000409809 LCN15Q6UWW0 184 aa11.77□□□□□ -0.53
COL6A3-206ENST00000409809 LINC00469Q8N7U9 141 aa11.77□□□□□ -0.53
COL6A3-206ENST00000409809 ZNF2Q9BSG1 426 aaPredicted RBP11.77□□□□□ -0.53
COL6A3-206ENST00000409809 NGBQ9NPG2 151 aa11.77□□□□□ -0.53
COL6A3-206ENST00000409809 PLSCR3Q9NRY6 295 aa11.77□□□□□ -0.53
COL6A3-206ENST00000409809 SLAMF8Q9P0V8 285 aa11.77□□□□□ -0.53
COL6A3-206ENST00000409809 ZNF860A6NHJ4 632 aa11.77□□□□□ -0.53
COL6A3-206ENST00000409809 THEM4Q5T1C6 240 aa11.77□□□□□ -0.53
COL6A3-206ENST00000409809 RNASEKQ6P5S7 137 aaKnown RBP11.77□□□□□ -0.53
COL6A3-206ENST00000409809 PLPP7Q8NBV4 271 aa11.77□□□□□ -0.53
COL6A3-206ENST00000409809 ZNF384Q8TF68 577 aa11.77□□□□□ -0.53
COL6A3-206ENST00000409809 ING1Q9UK53 422 aaPredicted RBP11.77□□□□□ -0.53
COL6A3-206ENST00000409809 SLC5A10A0PJK1 596 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 HIST1H1BP16401 226 aaKnown RBP11.76□□□□□ -0.53
COL6A3-206ENST00000409809 C9orf62Q8N4C0 152 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 CHST14Q8NCH0 376 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 MZB1Q8WU39 189 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 CICQ96RK0 1608 aaPredicted RBP11.76□□□□□ -0.53
COL6A3-206ENST00000409809 IGHEP01854 428 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 F2RP25116 425 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 AQP6Q13520 282 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 Q7L0L9 218 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 RIMKLAQ8IXN7 391 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 CMTM4Q8IZR5 234 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 PHOSPHO2Q8TCD6 241 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 HELTA6NFD8 242 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 GAGE10A6NGK3 116 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 ST6GAL1P15907 406 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 INPP5JQ15735 1006 aaPredicted RBP11.76□□□□□ -0.53
COL6A3-206ENST00000409809 FIGLAQ6QHK4 219 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 FAM24BQ8N5W8 94 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 RPH3ALQ9UNE2 315 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 ARAP2Q8WZ64 1704 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 DOK2O60496 412 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 EDN1P05305 212 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 HNRNPA1P09651 372 aaKnown RBP eCLIP11.76□□□□□ -0.53
COL6A3-206ENST00000409809 RIPPLY2Q5TAB7 128 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 OR2M3Q8NG83 312 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 TEAD3Q99594 435 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 NIPSNAP1Q9BPW8 284 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 SLC46A2Q9BY10 475 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 PRO1933Q9H354 126 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 PHIPQ8WWQ0 1821 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 BMPR1BO00238 502 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 MPC2O95563 127 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 NID1P14543 1247 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 BMPR1AP36894 532 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 FLT3LGP49771 235 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 ZXDBP98169 803 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 C9orf152Q5JTZ5 239 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 LINC00518Q8N0U6 118 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 TMEM37Q8WXS4 190 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 PARD6GQ9BYG4 376 aaPredicted RBP11.76□□□□□ -0.53
COL6A3-206ENST00000409809 CTSFQ9UBX1 484 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 HAAOP46952 286 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 ZNF252P-AS1Q0IIN9 211 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 PRSS54Q6PEW0 395 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 MOB3CQ70IA8 216 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 CMTM8Q8IZV2 173 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 OR1L3Q8NH93 324 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 DTD1Q8TEA8 209 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 PSENENQ9NZ42 101 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 WRAP73Q9P2S5 460 aaPredicted RBP11.76□□□□□ -0.53
COL6A3-206ENST00000409809 FAM171A2A8MVW0 826 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 SIAH2O43255 324 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 HOXB2P14652 356 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 DIO1P49895 249 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 OR2B11Q5JQS5 317 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 FDX2Q6P4F2 183 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 TRILQ7L0X0 811 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 DCXRQ7Z4W1 244 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 MEGF10Q96KG7 1140 aa11.76□□□□□ -0.53
COL6A3-206ENST00000409809 FAM72CH0Y354 149 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 FAM72AQ5TYM5 149 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 FAM72DQ6L9T8 149 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 FAM72BQ86X60 149 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 PIGCQ92535 297 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 ZNF385DQ9H6B1 395 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 SERINC4A6NH21 518 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 ST6GAL2Q96JF0 529 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 ZFP30Q9Y2G7 519 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 CD96P40200 585 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 FABP5Q01469 135 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 FZD2Q14332 565 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 GALR2O43603 387 aaPredicted RBP11.75□□□□□ -0.53
COL6A3-206ENST00000409809 KIR2DS2P43631 304 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms