RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 NTF4P34130 210 aa15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 PTGER4P35408 488 aa15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 MFGE8Q08431 387 aaPredicted RBP15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 SNTB2Q13425 540 aaKnown RBP15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 RAB35Q15286 201 aa15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 HES5Q5TA89 166 aa15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 BTN2A1Q7KYR7 527 aa15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 SLC16A14Q7RTX9 510 aa15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 ADGRE4PQ86SQ3 457 aa15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 LUZP2Q86TE4 346 aa15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 ASCC1Q8N9N2 400 aaKnown RBP15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 WNT2BQ93097 391 aa15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 SLC25A38Q96DW6 304 aa15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 DMRTB1Q96MA1 342 aa15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 CACNG6Q9BXT2 260 aa15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 SLC25A18Q9H1K4 315 aa15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 LIN7BQ9HAP6 207 aa15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 FAM206AQ9NX38 181 aa15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 PTTG3PQ9NZH4 202 aa15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 CLCF1Q9UBD9 225 aa15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 FBXL3Q9UKT7 428 aa15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 MRPS7Q9Y2R9 242 aaKnown RBP15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 RBMX2Q9Y388 322 aaKnown RBP15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 TIMM10BQ9Y5J6 103 aa15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 PNPP00491 289 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 CD3GP09693 182 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 AGTR1P30556 359 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 GZMKP49863 264 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 CD83Q01151 205 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 CD276Q5ZPR3 534 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 ZNF813Q6ZN06 617 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 GLCCI1Q86VQ1 547 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 ELMOD2Q8IZ81 293 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 ZNF283Q8N7M2 679 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 OR10S1Q8NGN2 331 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 FCAMRQ8WWV6 532 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 TRIB1Q96RU8 372 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 G6PC2Q9NQR9 355 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 SLC17A5Q9NRA2 495 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 SLC7A10Q9NS82 523 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 PLEK2Q9NYT0 353 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 OR5V1Q9UGF6 321 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 CLEC4AQ9UMR7 237 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 LHX6Q9UPM6 363 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 SPTBN4Q9H254 2564 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 A0A0B4J203 849 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 A0A1B0GTH9 108 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 A8MV72 311 aaPredicted RBP15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 SGCEO43556 437 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 PRAF2O60831 178 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 TGM6O95932 706 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 WNT11O96014 354 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 PDGFAP04085 211 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 GSTT2P0CG29 244 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 GABRA1P14867 456 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 B4GALT1P15291 398 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 GDNFP39905 211 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 TNK1Q13470 666 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 ZNF627Q7L945 461 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 FGD2Q7Z6J4 655 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 OR56B4Q8NH76 319 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 ZFAND1Q8TCF1 268 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 TMEM106AQ96A25 262 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 GPR137Q96N19 417 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 FYTTD1Q96QD9 318 aaKnown RBP15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 GON7Q9BXV9 100 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 PBOV1Q9GZY1 135 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 MED28Q9H204 178 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 GHITMQ9H3K2 345 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 PNRC2Q9NPJ4 139 aaKnown RBP15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 STEAP1Q9UHE8 339 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 FOXJ3Q9UPW0 622 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 SLC22A13Q9Y226 551 aa15.97■□□□□ 0.15
CCDC88C-203ENST00000389856 APC2O95996 2303 aa15.96■□□□□ 0.15
CCDC88C-203ENST00000389856 CACNA1CQ13936 2221 aa15.96■□□□□ 0.15
CCDC88C-203ENST00000389856 A0A1B0GVI7 797 aa15.96■□□□□ 0.15
CCDC88C-203ENST00000389856 A6NIN4 97 aa15.96■□□□□ 0.15
CCDC88C-203ENST00000389856 STOMP27105 288 aa15.96■□□□□ 0.15
CCDC88C-203ENST00000389856 SOX2P48431 317 aa15.96■□□□□ 0.15
CCDC88C-203ENST00000389856 CX3CR1P49238 355 aa15.96■□□□□ 0.15
CCDC88C-203ENST00000389856 FAPQ12884 760 aa15.96■□□□□ 0.15
CCDC88C-203ENST00000389856 EIF2S3LQ2VIR3 472 aaKnown RBP15.96■□□□□ 0.15
CCDC88C-203ENST00000389856 PLEKHN1Q494U1 663 aaPredicted RBP15.96■□□□□ 0.15
CCDC88C-203ENST00000389856 TMEM53Q6P2H8 277 aa15.96■□□□□ 0.15
CCDC88C-203ENST00000389856 LINGO2Q7L985 606 aa15.96■□□□□ 0.15
CCDC88C-203ENST00000389856 CCDC54Q8NEL0 328 aa15.96■□□□□ 0.15
CCDC88C-203ENST00000389856 SYNPRQ8TBG9 265 aa15.96■□□□□ 0.15
CCDC88C-203ENST00000389856 MCUBQ9NWR8 336 aa15.96■□□□□ 0.15
CCDC88C-203ENST00000389856 ATPIF1Q9UII2 106 aa15.96■□□□□ 0.15
CCDC88C-203ENST00000389856 TUBD1Q9UJT1 453 aa15.96■□□□□ 0.15
CCDC88C-203ENST00000389856 TP53TG5Q9Y2B4 290 aa15.96■□□□□ 0.15
CCDC88C-203ENST00000389856 ACACAQ13085 2346 aa15.95■□□□□ 0.14
CCDC88C-203ENST00000389856 SPTBN2O15020 2390 aa15.95■□□□□ 0.14
CCDC88C-203ENST00000389856 CNOT4O95628 575 aaKnown RBP15.95■□□□□ 0.14
CCDC88C-203ENST00000389856 H2AFB2P0C5Z0 115 aa15.95■□□□□ 0.14
CCDC88C-203ENST00000389856 ADRA2CP18825 462 aa15.95■□□□□ 0.14
CCDC88C-203ENST00000389856 OR3A2P47893 321 aa15.95■□□□□ 0.14
CCDC88C-203ENST00000389856 CAPZA1P52907 286 aa15.95■□□□□ 0.14
CCDC88C-203ENST00000389856 ODF4Q2M2E3 257 aa15.95■□□□□ 0.14
CCDC88C-203ENST00000389856 TMEM69Q5SWH9 247 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms