RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 PRSS35Q8N3Z0 413 aa12.85□□□□□ -0.35
RTF1-201ENST00000389629 TMEM104Q8NE00 496 aa12.85□□□□□ -0.35
RTF1-201ENST00000389629 ZNF681Q96N22 645 aa12.85□□□□□ -0.35
RTF1-201ENST00000389629 PRSS27Q9BQR3 290 aa12.85□□□□□ -0.35
RTF1-201ENST00000389629 AK3Q9UIJ7 227 aa12.85□□□□□ -0.35
RTF1-201ENST00000389629 TIMM8BQ9Y5J9 83 aaPredicted RBP12.85□□□□□ -0.35
RTF1-201ENST00000389629 CPED1A4D0V7 1026 aa12.85□□□□□ -0.35
RTF1-201ENST00000389629 AP4M1O00189 453 aa12.85□□□□□ -0.35
RTF1-201ENST00000389629 BIDP55957 195 aa12.85□□□□□ -0.35
RTF1-201ENST00000389629 MTCP1P56278 107 aa12.85□□□□□ -0.35
RTF1-201ENST00000389629 PPP2CBP62714 309 aa12.85□□□□□ -0.35
RTF1-201ENST00000389629 PPP2CAP67775 309 aa12.85□□□□□ -0.35
RTF1-201ENST00000389629 VWA2Q5GFL6 755 aa12.85□□□□□ -0.35
RTF1-201ENST00000389629 RTL10Q7L3V2 364 aa12.85□□□□□ -0.35
RTF1-201ENST00000389629 OR14L1PQ8NHC6 308 aa12.85□□□□□ -0.35
RTF1-201ENST00000389629 APOBEC4Q8WW27 367 aaKnown RBP12.85□□□□□ -0.35
RTF1-201ENST00000389629 PGLYRP3Q96LB9 341 aa12.85□□□□□ -0.35
RTF1-201ENST00000389629 MRM2Q9UI43 246 aaKnown RBP12.85□□□□□ -0.35
RTF1-201ENST00000389629 ST6GAL1P15907 406 aa12.85□□□□□ -0.35
RTF1-201ENST00000389629 SSBP1Q04837 148 aaKnown RBP12.85□□□□□ -0.35
RTF1-201ENST00000389629 C1orf87Q8N0U7 546 aa12.85□□□□□ -0.35
RTF1-201ENST00000389629 BAHD1Q8TBE0 780 aaPredicted RBP12.85□□□□□ -0.35
RTF1-201ENST00000389629 NT5CQ8TCD5 201 aa12.85□□□□□ -0.35
RTF1-201ENST00000389629 EDAQ92838 391 aa12.85□□□□□ -0.35
RTF1-201ENST00000389629 C4orf45Q96LM5 186 aa12.85□□□□□ -0.35
RTF1-201ENST00000389629 ABHD6Q9BV23 337 aa12.85□□□□□ -0.35
RTF1-201ENST00000389629 SEC11CQ9BY50 192 aa12.85□□□□□ -0.35
RTF1-201ENST00000389629 FRRS1LQ9P0K9 344 aa12.85□□□□□ -0.35
RTF1-201ENST00000389629 FLVCR1Q9Y5Y0 555 aa12.85□□□□□ -0.35
RTF1-201ENST00000389629 ARPC3O15145 178 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 ST8SIA3O43173 380 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 EIF3GO75821 320 aaKnown RBP eCLIP12.84□□□□□ -0.35
RTF1-201ENST00000389629 NKX2-2O95096 273 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 OPRM1P35372 400 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 POLR2HP52434 150 aaKnown RBP12.84□□□□□ -0.35
RTF1-201ENST00000389629 SGCBQ16585 318 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 ZNF74Q16587 644 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 C15orf54Q8N8G6 183 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 CA5BP1Q8WTZ4 195 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 WWTR1Q9GZV5 400 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 B9D1Q9UPM9 204 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 PIAS3Q9Y6X2 628 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 OR7C1O76099 320 aaPredicted RBP12.84□□□□□ -0.35
RTF1-201ENST00000389629 DPP4P27487 766 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 TLE4Q04727 773 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 ZNF266Q14584 549 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 TMEM255AQ5JRV8 349 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 CMTM1Q8IZ96 169 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 RBMXL1Q96E39 390 aaKnown RBP12.84□□□□□ -0.35
RTF1-201ENST00000389629 KTI12Q96EK9 354 aaPredicted RBP12.84□□□□□ -0.35
RTF1-201ENST00000389629 LPAR4Q99677 370 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 GNG13Q9P2W3 67 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 C7orf77A4D0Y5 90 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 ZNF84P51523 738 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 NANOS3P60323 173 aaKnown RBP12.84□□□□□ -0.35
RTF1-201ENST00000389629 C1orf140Q5VVS0 124 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 ZNF775Q96BV0 537 aaPredicted RBP12.84□□□□□ -0.35
RTF1-201ENST00000389629 ZNF707Q96C28 371 aaPredicted RBP12.84□□□□□ -0.35
RTF1-201ENST00000389629 KLHL13Q9P2N7 655 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 CES1P1Q9UKY3 287 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 SLC17A4Q9Y2C5 497 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 PAPPA2Q9BXP8 1791 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 BATF2Q8N1L9 274 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 LFNGQ8NES3 379 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 SLC25A38Q96DW6 304 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 RSPRY1Q96DX4 576 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 RAB33BQ9H082 229 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 DHCR7Q9UBM7 475 aaKnown RBP12.84□□□□□ -0.35
RTF1-201ENST00000389629 CHD5Q8TDI0 1954 aa12.84□□□□□ -0.35
RTF1-201ENST00000389629 IGKV1-8A0A0C4DH67 115 aa12.83□□□□□ -0.35
RTF1-201ENST00000389629 TMEM127O75204 238 aa12.83□□□□□ -0.35
RTF1-201ENST00000389629 MESP2Q0VG99 397 aa12.83□□□□□ -0.35
RTF1-201ENST00000389629 TOMM34Q15785 309 aaPredicted RBP12.83□□□□□ -0.35
RTF1-201ENST00000389629 EMC4Q5J8M3 183 aa12.83□□□□□ -0.35
RTF1-201ENST00000389629 FAM199XQ6PEV8 388 aaPredicted RBP12.83□□□□□ -0.35
RTF1-201ENST00000389629 LRRC18Q8N456 261 aa12.83□□□□□ -0.35
RTF1-201ENST00000389629 TMEM156Q8N614 296 aa12.83□□□□□ -0.35
RTF1-201ENST00000389629 PATZ1Q9HBE1 687 aaKnown RBP12.83□□□□□ -0.35
RTF1-201ENST00000389629 PADI1Q9ULC6 663 aa12.83□□□□□ -0.35
RTF1-201ENST00000389629 TNFSF18Q9UNG2 199 aa12.83□□□□□ -0.35
RTF1-201ENST00000389629 DICER1Q9UPY3 1922 aaKnown RBP12.83□□□□□ -0.36
RTF1-201ENST00000389629 DOCK4Q8N1I0 1966 aa12.83□□□□□ -0.36
RTF1-201ENST00000389629 CRHP06850 196 aa12.83□□□□□ -0.36
RTF1-201ENST00000389629 RAB1AP62820 205 aa12.83□□□□□ -0.36
RTF1-201ENST00000389629 PRICKLE4Q2TBC4 344 aa12.83□□□□□ -0.36
RTF1-201ENST00000389629 SP6Q3SY56 376 aa12.83□□□□□ -0.36
RTF1-201ENST00000389629 ZNF610Q8N9Z0 462 aa12.83□□□□□ -0.36
RTF1-201ENST00000389629 NPEPL1Q8NDH3 523 aa12.83□□□□□ -0.36
RTF1-201ENST00000389629 SEMA6DQ8NFY4 1073 aa12.83□□□□□ -0.36
RTF1-201ENST00000389629 STT3BQ8TCJ2 826 aa12.83□□□□□ -0.36
RTF1-201ENST00000389629 OR2A5Q96R48 311 aa12.83□□□□□ -0.36
RTF1-201ENST00000389629 PAPOLGQ9BWT3 736 aaKnown RBP12.83□□□□□ -0.36
RTF1-201ENST00000389629 SAMD10Q9BYL1 202 aa12.83□□□□□ -0.36
RTF1-201ENST00000389629 ZMIZ1Q9ULJ6 1067 aa12.83□□□□□ -0.36
RTF1-201ENST00000389629 FAM221AA4D161 298 aa12.83□□□□□ -0.36
RTF1-201ENST00000389629 A8MXK9 166 aa12.83□□□□□ -0.36
RTF1-201ENST00000389629 EPPINO95925 133 aa12.83□□□□□ -0.36
RTF1-201ENST00000389629 HPNP05981 417 aa12.83□□□□□ -0.36
RTF1-201ENST00000389629 CLEC1AQ8NC01 280 aa12.83□□□□□ -0.36
RTF1-201ENST00000389629 MEGF10Q96KG7 1140 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms