RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 ALG12Q9BV10 488 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 ADGRL4Q9HBW9 690 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 FGF20Q9NP95 211 aaPredicted RBP3.11□□□□□ -1.91
MCF2-202ENST00000370573 ASF1BQ9NVP2 202 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 HAO2Q9NYQ3 351 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 CNOT2Q9NZN8 540 aaKnown RBP3.11□□□□□ -1.91
MCF2-202ENST00000370573 KIAA1456Q9P272 454 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 CRNNQ9UBG3 495 aaPredicted RBP3.11□□□□□ -1.91
MCF2-202ENST00000370573 WARS2Q9UGM6 360 aaKnown RBP3.11□□□□□ -1.91
MCF2-202ENST00000370573 CLEC2DQ9UHP7 191 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 CLEC4AQ9UMR7 237 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 FLVCR1Q9Y5Y0 555 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 CFAP46Q8IYW2 2715 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 FREM1Q5H8C1 2179 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 A0A087WXM4 84 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 ZNF726A6NNF4 738 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 SELENOFO60613 162 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 RENP00797 406 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 TFP02787 698 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 IL6RP08887 468 aaPredicted RBP3.1□□□□□ -1.91
MCF2-202ENST00000370573 MRPL3P09001 348 aaKnown RBP3.1□□□□□ -1.91
MCF2-202ENST00000370573 LIMS3P0CW19 117 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 LIMS4P0CW20 117 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 PAICSP22234 425 aaKnown RBP3.1□□□□□ -1.91
MCF2-202ENST00000370573 CD79BP40259 229 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 ALDH3B2P48448 385 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 ETV1P50549 477 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 EMX1Q04741 257 aaPredicted RBP3.1□□□□□ -1.91
MCF2-202ENST00000370573 RAB40BQ12829 278 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 GGTLC2Q14390 218 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 RNPS1Q15287 305 aaKnown RBP3.1□□□□□ -1.91
MCF2-202ENST00000370573 KLHL22Q53GT1 634 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 XAF1Q6GPH4 301 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 RTL6Q6ICC9 239 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 C11orf88Q6PI97 169 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 KCTD8Q6ZWB6 473 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 LINGO2Q7L985 606 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 AAED1Q7RTV5 226 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 PRSS48Q7RTY5 328 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 NUFIP2Q7Z417 695 aaKnown RBP3.1□□□□□ -1.91
MCF2-202ENST00000370573 GID4Q8IVV7 300 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 C20orf196Q8IYI0 205 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 C9orf106Q8NAJ2 232 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 OR51G2Q8NGK0 314 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 OR2T4Q8NH00 348 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 RFKQ969G6 155 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 MYDGFQ969H8 173 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 TMIGD2Q96BF3 282 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 SARAFQ96BY9 339 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 SLC25A44Q96H78 314 aaPredicted RBP3.1□□□□□ -1.91
MCF2-202ENST00000370573 TMEM80Q96HE8 168 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 ADAD1Q96M93 576 aaKnown RBP3.1□□□□□ -1.91
MCF2-202ENST00000370573 INTS14Q96SY0 518 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 CDCA4Q9BXL8 241 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 MRPS26Q9BYN8 205 aaKnown RBP3.1□□□□□ -1.91
MCF2-202ENST00000370573 CCDC90BQ9GZT6 254 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 HRH4Q9H3N8 390 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 RERGLQ9H628 205 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 MARCH7Q9H992 704 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 TRIM36Q9NQ86 728 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 MRPL22Q9NWU5 206 aaKnown RBP3.1□□□□□ -1.91
MCF2-202ENST00000370573 PAQR5Q9NXK6 330 aaPredicted RBP3.1□□□□□ -1.91
MCF2-202ENST00000370573 GLTPQ9NZD2 209 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 CLCF1Q9UBD9 225 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 MCTS1Q9ULC4 181 aaKnown RBP3.1□□□□□ -1.91
MCF2-202ENST00000370573 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.1□□□□□ -1.91
MCF2-202ENST00000370573 DIMT1Q9UNQ2 313 aaKnown RBP3.1□□□□□ -1.91
MCF2-202ENST00000370573 ZNF175Q9Y473 711 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 FKBP7Q9Y680 259 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 ZGRF1Q86YA3 2104 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 EPG5Q9HCE0 2579 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 SLC22A20A6NK97 555 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 ZNF724A8MTY0 619 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 FAM25EA8MYX2 175 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 AHRRA9YTQ3 701 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 PRR32B1ATL7 298 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 M0R3G1 203 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 MAGEB4O15481 346 aaPredicted RBP3.1□□□□□ -1.91
MCF2-202ENST00000370573 MRPS14O60783 128 aaKnown RBP3.1□□□□□ -1.91
MCF2-202ENST00000370573 KHDRBS3O75525 346 aaKnown RBP3.1□□□□□ -1.91
MCF2-202ENST00000370573 UPK3AO75631 287 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 CLPTM1O96005 669 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 PTHP01270 115 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 IGHG1P01857 330 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 LCKP06239 509 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 YES1P07947 543 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 SBK2P0C263 348 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 MMP9P14780 707 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 NR4A1P22736 598 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 CDAP32320 146 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 NAA10P41227 235 aaPredicted RBP3.1□□□□□ -1.91
MCF2-202ENST00000370573 CSNK1A1P48729 337 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 ZNF133P52736 654 aaPredicted RBP3.1□□□□□ -1.91
MCF2-202ENST00000370573 FOXG1P55316 489 aaPredicted RBP3.1□□□□□ -1.91
MCF2-202ENST00000370573 ZNF85Q03923 595 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 KLRB1Q12918 225 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 GUSBP1Q15486 140 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 NEDD8Q15843 81 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 MEP1BQ16820 701 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 HFEQ30201 348 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms