RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 DLL4Q9NR61 685 aa12.86□□□□□ -0.35
SMPDL3A-201ENST00000368440 CLN6Q9NWW5 311 aa12.86□□□□□ -0.35
SMPDL3A-201ENST00000368440 N6AMT1Q9Y5N5 214 aa12.86□□□□□ -0.35
SMPDL3A-201ENST00000368440 IGHV4-30-2A0A087WSY4 118 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 LYNX1G3V0Z9 82 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 TIMM8AO60220 97 aaPredicted RBP12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 ENTPD6O75354 484 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 HPXP02790 462 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 H2BFMP0C1H6 154 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 LYNX1P0DP58 116 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 KITLGP21583 273 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 TUBG1P23258 451 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 HSD11B1P28845 292 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 HTR1FP30939 366 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 GRB2P62993 217 aaKnown RBP12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 OR2T2Q6IF00 324 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 ZNF773Q6PK81 442 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 SLC35F2Q8IXU6 374 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 OR5AS1Q8N127 324 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 OR5L1Q8NGL2 311 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 OR2AE1Q8NHA4 323 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 NEU4Q8WWR8 484 aaPredicted RBP12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 HAVCR1Q96D42 359 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 TUBG2Q9NRH3 451 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 HAO2Q9NYQ3 351 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 TPRKBQ9Y3C4 175 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 CR1P17927 2039 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 H7C1Q1 480 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 LILRA1O75019 489 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 HTR1AP08908 422 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 SBK2P0C263 348 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 CCDC159P0C7I6 412 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 RAC2P15153 192 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 SLC15A1P46059 708 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 RPL5P46777 297 aaKnown RBP12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 ZNF81P51508 661 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 SNRPGP62308 76 aaKnown RBP12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 GK2Q14410 553 aaPredicted RBP12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 GLYATL3Q5SZD4 288 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 Q6ZR03 302 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 KCTD8Q6ZWB6 473 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 PRSS45Q7RTY3 260 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 TRUB1Q8WWH5 349 aaKnown RBP12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 WARS2Q9UGM6 360 aaKnown RBP12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 GPR160Q9UJ42 338 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 LRP12Q9Y561 859 aa12.85□□□□□ -0.35
SMPDL3A-201ENST00000368440 A6NHS1 94 aa12.84□□□□□ -0.35
SMPDL3A-201ENST00000368440 MAGEB4O15481 346 aaPredicted RBP12.84□□□□□ -0.35
SMPDL3A-201ENST00000368440 SPRY3O43610 288 aa12.84□□□□□ -0.35
SMPDL3A-201ENST00000368440 MPZL2O60487 215 aa12.84□□□□□ -0.35
SMPDL3A-201ENST00000368440 IGHV1-46P01743 117 aa12.84□□□□□ -0.35
SMPDL3A-201ENST00000368440 CD99P14209 185 aa12.84□□□□□ -0.35
SMPDL3A-201ENST00000368440 DAOP14920 347 aa12.84□□□□□ -0.35
SMPDL3A-201ENST00000368440 ZNF121P58317 390 aaPredicted RBP12.84□□□□□ -0.35
SMPDL3A-201ENST00000368440 CCL8P80075 99 aa12.84□□□□□ -0.35
SMPDL3A-201ENST00000368440 ZNF92Q03936 586 aa12.84□□□□□ -0.35
SMPDL3A-201ENST00000368440 CARTPTQ16568 116 aa12.84□□□□□ -0.35
SMPDL3A-201ENST00000368440 MOGQ16653 247 aa12.84□□□□□ -0.35
SMPDL3A-201ENST00000368440 TSTQ16762 297 aaKnown RBP12.84□□□□□ -0.35
SMPDL3A-201ENST00000368440 CLEC2AQ6UVW9 174 aa12.84□□□□□ -0.35
SMPDL3A-201ENST00000368440 RHOUQ7L0Q8 258 aa12.84□□□□□ -0.35
SMPDL3A-201ENST00000368440 LURAP1LQ8IV03 231 aa12.84□□□□□ -0.35
SMPDL3A-201ENST00000368440 MAPK1IP1LQ8NDC0 245 aa12.84□□□□□ -0.35
SMPDL3A-201ENST00000368440 TMIGD2Q96BF3 282 aa12.84□□□□□ -0.35
SMPDL3A-201ENST00000368440 BRD7Q9NPI1 651 aa12.84□□□□□ -0.35
SMPDL3A-201ENST00000368440 ZNF319Q9P2F9 582 aa12.84□□□□□ -0.35
SMPDL3A-201ENST00000368440 SNX5Q9Y5X3 404 aa12.84□□□□□ -0.35
SMPDL3A-201ENST00000368440 PLSCR5A0PG75 271 aa12.83□□□□□ -0.36
SMPDL3A-201ENST00000368440 RNF223E7ERA6 249 aa12.83□□□□□ -0.36
SMPDL3A-201ENST00000368440 F8P00451 2351 aa12.83□□□□□ -0.36
SMPDL3A-201ENST00000368440 ANXA2P07355 339 aaKnown RBP12.83□□□□□ -0.36
SMPDL3A-201ENST00000368440 ERCC1P07992 297 aaPredicted RBP12.83□□□□□ -0.36
SMPDL3A-201ENST00000368440 GABARAPL2P60520 117 aa12.83□□□□□ -0.36
SMPDL3A-201ENST00000368440 CXCR4P61073 352 aa12.83□□□□□ -0.36
SMPDL3A-201ENST00000368440 SPRNQ5BIV9 151 aa12.83□□□□□ -0.36
SMPDL3A-201ENST00000368440 FAM57BQ71RH2 274 aa12.83□□□□□ -0.36
SMPDL3A-201ENST00000368440 SSX6Q7RTT6 188 aa12.83□□□□□ -0.36
SMPDL3A-201ENST00000368440 KRT77Q7Z794 578 aa12.83□□□□□ -0.36
SMPDL3A-201ENST00000368440 BHLHE23Q8NDY6 225 aa12.83□□□□□ -0.36
SMPDL3A-201ENST00000368440 C10orf105Q8TEF2 133 aa12.83□□□□□ -0.36
SMPDL3A-201ENST00000368440 FAM168AQ92567 244 aa12.83□□□□□ -0.36
SMPDL3A-201ENST00000368440 TBX5Q99593 518 aa12.83□□□□□ -0.36
SMPDL3A-201ENST00000368440 MED13LQ71F56 2210 aa12.83□□□□□ -0.36
SMPDL3A-201ENST00000368440 SMAD7O15105 426 aaKnown RBP12.82□□□□□ -0.36
SMPDL3A-201ENST00000368440 TBX1O43435 398 aa12.82□□□□□ -0.36
SMPDL3A-201ENST00000368440 MAP2K4P45985 399 aa12.82□□□□□ -0.36
SMPDL3A-201ENST00000368440 SLC35A2P78381 396 aa12.82□□□□□ -0.36
SMPDL3A-201ENST00000368440 MVKQ03426 396 aa12.82□□□□□ -0.36
SMPDL3A-201ENST00000368440 MALLQ13021 153 aa12.82□□□□□ -0.36
SMPDL3A-201ENST00000368440 HNRNPA0Q13151 305 aaKnown RBP12.82□□□□□ -0.36
SMPDL3A-201ENST00000368440 OCLNQ16625 522 aa12.82□□□□□ -0.36
SMPDL3A-201ENST00000368440 SLC25A30Q5SVS4 291 aa12.82□□□□□ -0.36
SMPDL3A-201ENST00000368440 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.82□□□□□ -0.36
SMPDL3A-201ENST00000368440 SPARTQ8N0X7 666 aa12.82□□□□□ -0.36
SMPDL3A-201ENST00000368440 UBASH3BQ8TF42 649 aa12.82□□□□□ -0.36
SMPDL3A-201ENST00000368440 GGHQ92820 318 aa12.82□□□□□ -0.36
SMPDL3A-201ENST00000368440 RFKQ969G6 155 aa12.82□□□□□ -0.36
SMPDL3A-201ENST00000368440 YIPF5Q969M3 257 aa12.82□□□□□ -0.36
SMPDL3A-201ENST00000368440 COX4I2Q96KJ9 171 aa12.82□□□□□ -0.36
SMPDL3A-201ENST00000368440 OR8B4Q96RC9 309 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms