RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 RNF144BQ7Z419 303 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 CA13Q8N1Q1 262 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 ZNF565Q8N9K5 539 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 CCDC54Q8NEL0 328 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 SEMA6DQ8NFY4 1073 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 OR4K15Q8NH41 348 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 TERB2Q8NHR7 220 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 C2orf50Q96LR7 162 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 GNRHR2Q96P88 292 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 TGM7Q96PF1 710 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 HDAC8Q9BY41 377 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 SMIM3Q9BZL3 60 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 ZBP1Q9H171 429 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 KIR3DX1Q9H7L2 352 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP6.05□□□□□ -1.44
VPS39-202ENST00000348544 GSKIPQ9P0R6 139 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 SERGEFQ9UGK8 458 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 RAB22AQ9UL26 194 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 CEACAM18A8MTB9 384 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 GPR89AB7ZAQ6 455 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 MASP2O00187 686 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 TAAR5O14804 337 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 SLC31A2O15432 143 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 TSPAN15O95858 294 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 IFNA17P01571 189 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 GUSBP08236 651 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 GPR89BP0CG08 455 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 VSIG8P0DPA2 414 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 HIST1H1BP16401 226 aaKnown RBP6.05□□□□□ -1.44
VPS39-202ENST00000348544 RABIFP47224 123 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 DNASE1L1P49184 302 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 RBP2P50120 134 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 NDUFA6P56556 154 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 EIF5AP63241 154 aaKnown RBP6.05□□□□□ -1.44
VPS39-202ENST00000348544 RHEBQ15382 184 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 ACTBL2Q562R1 376 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 AGBL4Q5VU57 503 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 SLC18B1Q6NT16 456 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 CBLN3Q6UW01 205 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 SPNS3Q6ZMD2 512 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 TTLL10Q6ZVT0 673 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 MED25Q71SY5 747 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 TAF8Q7Z7C8 310 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 OR9K2Q8NGE7 335 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 OR1J1Q8NGS3 322 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 MR1Q95460 341 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 TAAR8Q969N4 342 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 VWCEQ96DN2 955 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 BSCL2Q96G97 398 aaPredicted RBP6.05□□□□□ -1.44
VPS39-202ENST00000348544 PIGQQ9BRB3 760 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 NICN1Q9BSH3 213 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 ABHD6Q9BV23 337 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 METTL8Q9H825 291 aaKnown RBP6.05□□□□□ -1.44
VPS39-202ENST00000348544 PARPBPQ9NWS1 579 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 GAR1Q9NY12 217 aaKnown RBP6.05□□□□□ -1.44
VPS39-202ENST00000348544 DOK5Q9P104 306 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 ATXN7L1Q9ULK2 861 aaPredicted RBP6.05□□□□□ -1.44
VPS39-202ENST00000348544 EMC9Q9Y3B6 208 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 MMP24Q9Y5R2 645 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 TRBV23OR9-2A0A075B6M9 112 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 A0A0A6YYD4 124 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 IGLV1-36A0A0B4J1U3 117 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 H0YGG7 62 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 H7C1Q1 480 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 WISP1O95388 367 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 CT45A8P0DMV1 189 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 CT45A9P0DMV2 189 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 TBPP20226 339 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 LMO1P25800 156 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 RPL12P30050 165 aaKnown RBP6.04□□□□□ -1.44
VPS39-202ENST00000348544 GDI1P31150 447 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 FCGR2CP31995 323 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 RPS10P46783 165 aaKnown RBP6.04□□□□□ -1.44
VPS39-202ENST00000348544 TMEM33P57088 247 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 ARF3P61204 181 aaPredicted RBP6.04□□□□□ -1.44
VPS39-202ENST00000348544 INSM1Q01101 510 aaPredicted RBP6.04□□□□□ -1.44
VPS39-202ENST00000348544 GAMTQ14353 236 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 PCK2Q16822 640 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 GAB4Q2WGN9 574 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 CT45A2Q5DJT8 189 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 FAM78AQ5JUQ0 283 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 GFI1BQ5VTD9 330 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 CLEC9AQ6UXN8 241 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 REC114Q7Z4M0 266 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 PEG10Q86TG7 708 aaKnown RBP6.04□□□□□ -1.44
VPS39-202ENST00000348544 ZNF615Q8N8J6 731 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 DTWD2Q8NBA8 298 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 TMEM104Q8NE00 496 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 OR52N4Q8NGI2 321 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 OR10D4PQ8NGN7 298 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 ERGIC1Q969X5 290 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 PTGES2Q9H7Z7 377 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 G6PC2Q9NQR9 355 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 TBC1D29Q9UFV1 150 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 ZDHHC8Q9ULC8 765 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 MED19A0JLT2 244 aaPredicted RBP6.04□□□□□ -1.44
VPS39-202ENST00000348544 MEGF11A6BM72 1044 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 ARGFXA6NJG6 315 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 C11orf98E9PRG8 122 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 ZNF354AO60765 605 aaPredicted RBP6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms