RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 OR10A2Q9H208 303 aa19.05■□□□□ 0.64
SDC3-202ENST00000339394 MOB1AQ9H8S9 216 aa19.05■□□□□ 0.64
SDC3-202ENST00000339394 TUBG2Q9NRH3 451 aa19.05■□□□□ 0.64
SDC3-202ENST00000339394 PTTG3PQ9NZH4 202 aa19.05■□□□□ 0.64
SDC3-202ENST00000339394 CMAHPQ9Y471 501 aa19.05■□□□□ 0.64
SDC3-202ENST00000339394 HEATR1Q9H583 2144 aaKnown RBP19.04■□□□□ 0.64
SDC3-202ENST00000339394 TRIM64A6NGJ6 449 aa19.04■□□□□ 0.64
SDC3-202ENST00000339394 ATE1O95260 518 aa19.04■□□□□ 0.64
SDC3-202ENST00000339394 ZNF250P15622 560 aa19.04■□□□□ 0.64
SDC3-202ENST00000339394 CDH15P55291 814 aa19.04■□□□□ 0.64
SDC3-202ENST00000339394 WNT4P56705 351 aa19.04■□□□□ 0.64
SDC3-202ENST00000339394 NANOS3P60323 173 aaKnown RBP19.04■□□□□ 0.64
SDC3-202ENST00000339394 ZNF92Q03936 586 aa19.04■□□□□ 0.64
SDC3-202ENST00000339394 GK2Q14410 553 aaPredicted RBP19.04■□□□□ 0.64
SDC3-202ENST00000339394 HLXQ14774 488 aaPredicted RBP19.04■□□□□ 0.64
SDC3-202ENST00000339394 GLYATL3Q5SZD4 288 aa19.04■□□□□ 0.64
SDC3-202ENST00000339394 ZNF544Q6NX49 715 aa19.04■□□□□ 0.64
SDC3-202ENST00000339394 CATSPERDQ86XM0 798 aa19.04■□□□□ 0.64
SDC3-202ENST00000339394 KLBQ86Z14 1044 aa19.04■□□□□ 0.64
SDC3-202ENST00000339394 PRSS35Q8N3Z0 413 aa19.04■□□□□ 0.64
SDC3-202ENST00000339394 OR2G2Q8NGZ5 317 aa19.04■□□□□ 0.64
SDC3-202ENST00000339394 SGK3Q96BR1 496 aa19.04■□□□□ 0.64
SDC3-202ENST00000339394 UBTD1Q9HAC8 227 aa19.04■□□□□ 0.64
SDC3-202ENST00000339394 FRRS1LQ9P0K9 344 aa19.04■□□□□ 0.64
SDC3-202ENST00000339394 SLC22A13Q9Y226 551 aa19.04■□□□□ 0.64
SDC3-202ENST00000339394 TACC2O95359 2948 aa19.04■□□□□ 0.64
SDC3-202ENST00000339394 VSTM5A8MXK1 200 aa19.03■□□□□ 0.64
SDC3-202ENST00000339394 MRPS14O60783 128 aaKnown RBP19.03■□□□□ 0.64
SDC3-202ENST00000339394 TNFAIP8O95379 198 aa19.03■□□□□ 0.64
SDC3-202ENST00000339394 SERPINF1P36955 418 aa19.03■□□□□ 0.64
SDC3-202ENST00000339394 MPV17P39210 176 aa19.03■□□□□ 0.64
SDC3-202ENST00000339394 GTF2A1P52655 376 aaPredicted RBP19.03■□□□□ 0.64
SDC3-202ENST00000339394 GBX2P52951 348 aaPredicted RBP19.03■□□□□ 0.64
SDC3-202ENST00000339394 MRPL28Q13084 256 aaKnown RBP19.03■□□□□ 0.64
SDC3-202ENST00000339394 DOC2BQ14184 412 aa19.03■□□□□ 0.64
SDC3-202ENST00000339394 ZNF718Q3SXZ3 478 aa19.03■□□□□ 0.64
SDC3-202ENST00000339394 WDR38Q5JTN6 314 aa19.03■□□□□ 0.64
SDC3-202ENST00000339394 BCL2L15Q5TBC7 163 aa19.03■□□□□ 0.64
SDC3-202ENST00000339394 MBNL2Q5VZF2 373 aaKnown RBP19.03■□□□□ 0.64
SDC3-202ENST00000339394 XAF1Q6GPH4 301 aa19.03■□□□□ 0.64
SDC3-202ENST00000339394 FDX2Q6P4F2 183 aa19.03■□□□□ 0.64
SDC3-202ENST00000339394 LRP11Q86VZ4 500 aa19.03■□□□□ 0.64
SDC3-202ENST00000339394 ELMOD2Q8IZ81 293 aa19.03■□□□□ 0.64
SDC3-202ENST00000339394 MRPL24Q96A35 216 aaKnown RBP19.03■□□□□ 0.64
SDC3-202ENST00000339394 DUSP13Q9UII6 198 aa19.03■□□□□ 0.64
SDC3-202ENST00000339394 XRCC2O43543 280 aa19.02■□□□□ 0.64
SDC3-202ENST00000339394 LALBAP00709 142 aa19.02■□□□□ 0.64
SDC3-202ENST00000339394 TTRP02766 147 aa19.02■□□□□ 0.64
SDC3-202ENST00000339394 TTKP33981 857 aa19.02■□□□□ 0.64
SDC3-202ENST00000339394 MAP2K4P45985 399 aa19.02■□□□□ 0.64
SDC3-202ENST00000339394 TIGD6Q17RP2 521 aa19.02■□□□□ 0.64
SDC3-202ENST00000339394 GFOD2Q3B7J2 385 aa19.02■□□□□ 0.64
SDC3-202ENST00000339394 FBXW12Q6X9E4 464 aa19.02■□□□□ 0.64
SDC3-202ENST00000339394 MUC15Q8N387 334 aa19.02■□□□□ 0.64
SDC3-202ENST00000339394 ZNF611Q8N823 705 aa19.02■□□□□ 0.64
SDC3-202ENST00000339394 SYNPRQ8TBG9 265 aa19.02■□□□□ 0.64
SDC3-202ENST00000339394 HAVCR2Q8TDQ0 301 aa19.02■□□□□ 0.64
SDC3-202ENST00000339394 REEP6Q96HR9 211 aa19.02■□□□□ 0.64
SDC3-202ENST00000339394 OR5M11Q96RB7 305 aa19.02■□□□□ 0.64
SDC3-202ENST00000339394 REPIN1Q9BWE0 567 aaKnown RBP19.02■□□□□ 0.64
SDC3-202ENST00000339394 MRPL37Q9BZE1 423 aaKnown RBP19.02■□□□□ 0.64
SDC3-202ENST00000339394 LSM2Q9Y333 95 aaKnown RBP19.02■□□□□ 0.64
SDC3-202ENST00000339394 CLPTM1O96005 669 aa19.02■□□□□ 0.63
SDC3-202ENST00000339394 GCH1P30793 250 aa19.02■□□□□ 0.63
SDC3-202ENST00000339394 TGM4P49221 684 aa19.02■□□□□ 0.63
SDC3-202ENST00000339394 PSG7Q13046 419 aa19.02■□□□□ 0.63
SDC3-202ENST00000339394 PGAP1Q75T13 922 aa19.02■□□□□ 0.63
SDC3-202ENST00000339394 SPARTQ8N0X7 666 aa19.02■□□□□ 0.63
SDC3-202ENST00000339394 SPSB4Q96A44 273 aa19.02■□□□□ 0.63
SDC3-202ENST00000339394 CMBLQ96DG6 245 aa19.02■□□□□ 0.63
SDC3-202ENST00000339394 SYT3Q9BQG1 590 aa19.02■□□□□ 0.63
SDC3-202ENST00000339394 PLK3Q9H4B4 646 aa19.02■□□□□ 0.63
SDC3-202ENST00000339394 PLCE1Q9P212 2302 aa19.01■□□□□ 0.63
SDC3-202ENST00000339394 IGLV3-9A0A075B6K5 115 aa19.01■□□□□ 0.63
SDC3-202ENST00000339394 A0A0U1RQV5 110 aa19.01■□□□□ 0.63
SDC3-202ENST00000339394 H3BSA7 217 aa19.01■□□□□ 0.63
SDC3-202ENST00000339394 DANCRP0C864 163 aa19.01■□□□□ 0.63
SDC3-202ENST00000339394 RAC2P15153 192 aa19.01■□□□□ 0.63
SDC3-202ENST00000339394 KIR3DL2P43630 455 aa19.01■□□□□ 0.63
SDC3-202ENST00000339394 CCR9P51686 369 aa19.01■□□□□ 0.63
SDC3-202ENST00000339394 PRSS12P56730 875 aa19.01■□□□□ 0.63
SDC3-202ENST00000339394 KRTAP10-9P60411 292 aa19.01■□□□□ 0.63
SDC3-202ENST00000339394 EMX1Q04741 257 aaPredicted RBP19.01■□□□□ 0.63
SDC3-202ENST00000339394 ALKBH1Q13686 389 aaKnown RBP19.01■□□□□ 0.63
SDC3-202ENST00000339394 SPHARQ15513 63 aa19.01■□□□□ 0.63
SDC3-202ENST00000339394 MED22Q15528 200 aa19.01■□□□□ 0.63
SDC3-202ENST00000339394 ODF4Q2M2E3 257 aa19.01■□□□□ 0.63
SDC3-202ENST00000339394 CCDC58Q4VC31 144 aa19.01■□□□□ 0.63
SDC3-202ENST00000339394 TMEM255AQ5JRV8 349 aa19.01■□□□□ 0.63
SDC3-202ENST00000339394 ZNF773Q6PK81 442 aa19.01■□□□□ 0.63
SDC3-202ENST00000339394 FBXL14Q8N1E6 418 aa19.01■□□□□ 0.63
SDC3-202ENST00000339394 OR51E1Q8TCB6 317 aa19.01■□□□□ 0.63
SDC3-202ENST00000339394 HAVCR1Q96D42 359 aa19.01■□□□□ 0.63
SDC3-202ENST00000339394 LYZL4Q96KX0 146 aa19.01■□□□□ 0.63
SDC3-202ENST00000339394 NR1H4Q96RI1 486 aaPredicted RBP19.01■□□□□ 0.63
SDC3-202ENST00000339394 RGCCQ9H4X1 137 aa19.01■□□□□ 0.63
SDC3-202ENST00000339394 TRIM36Q9NQ86 728 aa19.01■□□□□ 0.63
SDC3-202ENST00000339394 FAIMQ9NVQ4 179 aa19.01■□□□□ 0.63
SDC3-202ENST00000339394 MYEF2Q9P2K5 600 aaKnown RBP19.01■□□□□ 0.63
SDC3-202ENST00000339394 CSMD2Q7Z408 3487 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms