RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 ROM1Q03395 351 aa6.13□□□□□ -1.43
SF3B1-201ENST00000335508 FAM214BQ7L5A3 538 aa6.13□□□□□ -1.43
SF3B1-201ENST00000335508 SLC38A9Q8NBW4 561 aa6.13□□□□□ -1.43
SF3B1-201ENST00000335508 GMPPAQ96IJ6 420 aaPredicted RBP6.13□□□□□ -1.43
SF3B1-201ENST00000335508 OR2M2Q96R28 347 aa6.13□□□□□ -1.43
SF3B1-201ENST00000335508 SLC6A15Q9H2J7 730 aa6.13□□□□□ -1.43
SF3B1-201ENST00000335508 MBD2Q9UBB5 411 aa6.13□□□□□ -1.43
SF3B1-201ENST00000335508 GNG12Q9UBI6 72 aa6.13□□□□□ -1.43
SF3B1-201ENST00000335508 NUBP2Q9Y5Y2 271 aa6.13□□□□□ -1.43
SF3B1-201ENST00000335508 DOCK4Q8N1I0 1966 aa6.13□□□□□ -1.43
SF3B1-201ENST00000335508 TIMM8AO60220 97 aaPredicted RBP6.13□□□□□ -1.43
SF3B1-201ENST00000335508 IFNA7P01567 189 aa6.13□□□□□ -1.43
SF3B1-201ENST00000335508 EVX1P49640 407 aa6.13□□□□□ -1.43
SF3B1-201ENST00000335508 RAP2BP61225 183 aa6.13□□□□□ -1.43
SF3B1-201ENST00000335508 SEC61A1P61619 476 aaKnown RBP6.13□□□□□ -1.43
SF3B1-201ENST00000335508 SOWAHCQ53LP3 525 aaPredicted RBP6.13□□□□□ -1.43
SF3B1-201ENST00000335508 BCDIN3DQ7Z5W3 292 aaKnown RBP6.13□□□□□ -1.43
SF3B1-201ENST00000335508 BPIFB2Q8N4F0 458 aa6.13□□□□□ -1.43
SF3B1-201ENST00000335508 BOD1Q96IK1 185 aa6.13□□□□□ -1.43
SF3B1-201ENST00000335508 BEX2Q9BXY8 128 aa6.13□□□□□ -1.43
SF3B1-201ENST00000335508 SLC5A7Q9GZV3 580 aa6.13□□□□□ -1.43
SF3B1-201ENST00000335508 SNRNP200O75643 2136 aaKnown RBP6.12□□□□□ -1.43
SF3B1-201ENST00000335508 LRP5LA4QPB2 252 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 ZNF354AO60765 605 aaPredicted RBP6.12□□□□□ -1.43
SF3B1-201ENST00000335508 AQP8O94778 261 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 BGLAPP02818 100 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 ASAH2BP0C7U1 165 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 SNRPBP14678 240 aaKnown RBP6.12□□□□□ -1.43
SF3B1-201ENST00000335508 RAC2P15153 192 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 ZNF32P17041 273 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 FUT5Q11128 374 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 COTL1Q14019 142 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 TGIF1Q15583 401 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 GLIPR1L1Q6UWM5 242 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 GLRX5Q86SX6 157 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 NPEPL1Q8NDH3 523 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 RHBDD3Q9Y3P4 386 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 HSPB11Q9Y547 144 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 TSPAN4O14817 238 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 SLC2A10O95528 541 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 COX6A1P12074 109 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 MSMO1Q15800 293 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 INO80CQ6PI98 192 aaPredicted RBP6.12□□□□□ -1.43
SF3B1-201ENST00000335508 ROBO4Q8WZ75 1007 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 TOMM40LQ969M1 308 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 KIF26BQ2KJY2 2108 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 KLF7O75840 302 aaPredicted RBP6.12□□□□□ -1.43
SF3B1-201ENST00000335508 SC5DO75845 299 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 NRASP01111 189 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 IGHV3-9P01782 118 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 CX3CR1P49238 355 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 FUT6P51993 359 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 RPL19P84098 196 aaKnown RBP6.12□□□□□ -1.43
SF3B1-201ENST00000335508 CFHR1Q03591 330 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 TEX30Q5JUR7 227 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 SYNPRQ8TBG9 265 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 OR51E1Q8TCB6 317 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 CHPT1Q8WUD6 406 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 EDARADDQ8WWZ3 215 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 WNT2BQ93097 391 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 ACKR4Q9NPB9 350 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 CACFD1Q9UGQ2 172 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 KCNE5Q9UJ90 142 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 SLCO1B1Q9Y6L6 691 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 IGHV1-45A0A0A0MS14 117 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 TEX51A0A1B0GUA7 166 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 GPR137BO60478 399 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 TSC22D2O75157 780 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 GDNFP39905 211 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 INSM1Q01101 510 aaPredicted RBP6.12□□□□□ -1.43
SF3B1-201ENST00000335508 PPA1Q15181 289 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 DMKNQ6E0U4 476 aaPredicted RBP6.12□□□□□ -1.43
SF3B1-201ENST00000335508 SULF2Q8IWU5 870 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 LRRC18Q8N456 261 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 SLC26A10Q8NG04 563 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 OR4D11Q8NGI4 311 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 WDFY2Q96P53 400 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 TRIB1Q96RU8 372 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 RANBP3Q9H6Z4 567 aaPredicted RBP6.12□□□□□ -1.43
SF3B1-201ENST00000335508 SYNPO2LQ9H987 977 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 FAIMQ9NVQ4 179 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 RALGAPA1Q6GYQ0 2036 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 SCGB2A1O75556 95 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 CDK2P24941 298 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 GNRHRP30968 328 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 MOB1BQ7L9L4 216 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 C12orf45Q8N5I9 185 aaPredicted RBP6.12□□□□□ -1.43
SF3B1-201ENST00000335508 BBS1Q8NFJ9 593 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 SMIM4Q8WVI0 70 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 FOXN4Q96NZ1 517 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 PBOV1Q9GZY1 135 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 FOXJ3Q9UPW0 622 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 EXOGQ9Y2C4 368 aaKnown RBP6.12□□□□□ -1.43
SF3B1-201ENST00000335508 FLVCR1Q9Y5Y0 555 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 CACNG2Q9Y698 323 aa6.12□□□□□ -1.43
SF3B1-201ENST00000335508 RNF212BA8MTL3 300 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 MSTNO14793 375 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 DHRS3O75911 302 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 CST2P09228 141 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 SOX8P57073 446 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms