RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 SLC5A6Q9Y289 635 aa12.54□□□□□ -0.4
C9orf3-202ENST00000297979 KCNMB2Q9Y691 235 aa12.54□□□□□ -0.4
C9orf3-202ENST00000297979 J3KRW8 73 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 CEACAM4O75871 244 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 SPNP16150 400 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 NR4A2P43354 598 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 GALK2Q01415 458 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 PMP22Q01453 160 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 ELFN2Q5R3F8 820 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 PLXDC2Q6UX71 529 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 CHMP1BQ7LBR1 199 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 KRT74Q7RTS7 529 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.53□□□□□ -0.4
C9orf3-202ENST00000297979 C19orf18Q8NEA5 215 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 MARC2Q969Z3 335 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 FBXO17Q96EF6 278 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 FOXB1Q99853 325 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 GPR35Q9HC97 309 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 OR5V1Q9UGF6 321 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 STEAP1Q9UHE8 339 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 ETV7Q9Y603 341 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 GVINP1Q7Z2Y8 2422 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 TRAV17A0A0B4J275 112 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 A0A1B0GVI7 797 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 CST2P09228 141 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 SLC2A1P11166 492 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 CEACAM16Q2WEN9 425 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 BAIAP2L2Q6UXY1 529 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 OR8B12Q8NGG6 310 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 SLC25A38Q96DW6 304 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 SLCO5A1Q9H2Y9 848 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 ZNF275Q9NSD4 429 aaPredicted RBP12.53□□□□□ -0.4
C9orf3-202ENST00000297979 PARPBPQ9NWS1 579 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 SPRR3Q9UBC9 169 aa12.53□□□□□ -0.4
C9orf3-202ENST00000297979 NCOA6Q14686 2063 aaPredicted RBP12.53□□□□□ -0.4
C9orf3-202ENST00000297979 TRAV20A0A0B4J274 112 aa12.52□□□□□ -0.4
C9orf3-202ENST00000297979 TFECO14948 347 aaPredicted RBP12.52□□□□□ -0.4
C9orf3-202ENST00000297979 LMX1BO60663 402 aa12.52□□□□□ -0.4
C9orf3-202ENST00000297979 UBL3O95164 117 aa12.52□□□□□ -0.4
C9orf3-202ENST00000297979 B4GALT1P15291 398 aa12.52□□□□□ -0.4
C9orf3-202ENST00000297979 SCAND1P57086 179 aa12.52□□□□□ -0.4
C9orf3-202ENST00000297979 RNPS1Q15287 305 aaKnown RBP12.52□□□□□ -0.4
C9orf3-202ENST00000297979 TUSC5Q8IXB3 177 aa12.52□□□□□ -0.4
C9orf3-202ENST00000297979 CMTM4Q8IZR5 234 aa12.52□□□□□ -0.4
C9orf3-202ENST00000297979 OR51E1Q8TCB6 317 aa12.52□□□□□ -0.4
C9orf3-202ENST00000297979 LINC00470Q9BZP3 86 aa12.52□□□□□ -0.4
C9orf3-202ENST00000297979 BCL2L14Q9BZR8 327 aa12.52□□□□□ -0.4
C9orf3-202ENST00000297979 RNF122Q9H9V4 155 aa12.52□□□□□ -0.4
C9orf3-202ENST00000297979 BCO1Q9HAY6 547 aa12.52□□□□□ -0.4
C9orf3-202ENST00000297979 PLEK2Q9NYT0 353 aa12.52□□□□□ -0.4
C9orf3-202ENST00000297979 ZNF724A8MTY0 619 aa12.52□□□□□ -0.41
C9orf3-202ENST00000297979 SSX4O60224 188 aa12.52□□□□□ -0.41
C9orf3-202ENST00000297979 KRT33AO76009 404 aa12.52□□□□□ -0.41
C9orf3-202ENST00000297979 CPN1P15169 458 aa12.52□□□□□ -0.41
C9orf3-202ENST00000297979 CD300CQ08708 224 aa12.52□□□□□ -0.41
C9orf3-202ENST00000297979 GLT8D1Q68CQ7 371 aa12.52□□□□□ -0.41
C9orf3-202ENST00000297979 WDYHV1Q96HA8 205 aa12.52□□□□□ -0.41
C9orf3-202ENST00000297979 ZNF407Q9C0G0 2248 aa12.52□□□□□ -0.41
C9orf3-202ENST00000297979 FAM186AA6NE01 2351 aa12.52□□□□□ -0.41
C9orf3-202ENST00000297979 MEGF11A6BM72 1044 aa12.52□□□□□ -0.41
C9orf3-202ENST00000297979 INPP1P49441 399 aa12.52□□□□□ -0.41
C9orf3-202ENST00000297979 PITPNAQ00169 270 aa12.52□□□□□ -0.41
C9orf3-202ENST00000297979 TSPO2Q5TGU0 170 aa12.52□□□□□ -0.41
C9orf3-202ENST00000297979 FAM57BQ71RH2 274 aa12.52□□□□□ -0.41
C9orf3-202ENST00000297979 ABHD12BQ7Z5M8 362 aaPredicted RBP12.52□□□□□ -0.41
C9orf3-202ENST00000297979 NRARPQ7Z6K4 114 aa12.52□□□□□ -0.41
C9orf3-202ENST00000297979 COMMD2Q86X83 199 aa12.52□□□□□ -0.41
C9orf3-202ENST00000297979 CCDC28AQ8IWP9 274 aa12.52□□□□□ -0.41
C9orf3-202ENST00000297979 PLPP7Q8NBV4 271 aa12.52□□□□□ -0.41
C9orf3-202ENST00000297979 FGGYQ96C11 551 aa12.52□□□□□ -0.41
C9orf3-202ENST00000297979 ABHD1Q96SE0 405 aa12.52□□□□□ -0.41
C9orf3-202ENST00000297979 SLC22A4Q9H015 551 aa12.52□□□□□ -0.41
C9orf3-202ENST00000297979 CALHM2Q9HA72 323 aa12.52□□□□□ -0.41
C9orf3-202ENST00000297979 CAMK2AQ9UQM7 478 aa12.52□□□□□ -0.41
C9orf3-202ENST00000297979 A0A1B0GTI1 187 aa12.51□□□□□ -0.41
C9orf3-202ENST00000297979 SLC17A2O00624 439 aa12.51□□□□□ -0.41
C9orf3-202ENST00000297979 EFSO43281 561 aa12.51□□□□□ -0.41
C9orf3-202ENST00000297979 ADRB1P08588 477 aa12.51□□□□□ -0.41
C9orf3-202ENST00000297979 RFX2P48378 723 aa12.51□□□□□ -0.41
C9orf3-202ENST00000297979 SCRN3Q0VDG4 424 aa12.51□□□□□ -0.41
C9orf3-202ENST00000297979 RAB35Q15286 201 aa12.51□□□□□ -0.41
C9orf3-202ENST00000297979 RAB11BQ15907 218 aa12.51□□□□□ -0.41
C9orf3-202ENST00000297979 PRSS45Q7RTY3 260 aa12.51□□□□□ -0.41
C9orf3-202ENST00000297979 MCEMP1Q8IX19 187 aa12.51□□□□□ -0.41
C9orf3-202ENST00000297979 SLC22A24Q8N4F4 322 aa12.51□□□□□ -0.41
C9orf3-202ENST00000297979 SYNPRQ8TBG9 265 aa12.51□□□□□ -0.41
C9orf3-202ENST00000297979 HDHD2Q9H0R4 259 aa12.51□□□□□ -0.41
C9orf3-202ENST00000297979 ABCG5Q9H222 651 aa12.51□□□□□ -0.41
C9orf3-202ENST00000297979 VSTM5A8MXK1 200 aa12.51□□□□□ -0.41
C9orf3-202ENST00000297979 F5H5K5 113 aa12.51□□□□□ -0.41
C9orf3-202ENST00000297979 PLA2G10O15496 165 aa12.51□□□□□ -0.41
C9orf3-202ENST00000297979 KLK10O43240 276 aa12.51□□□□□ -0.41
C9orf3-202ENST00000297979 ITGA5P08648 1049 aa12.51□□□□□ -0.41
C9orf3-202ENST00000297979 OTX1P32242 354 aaPredicted RBP12.51□□□□□ -0.41
C9orf3-202ENST00000297979 SERPINA12Q8IW75 414 aa12.51□□□□□ -0.41
C9orf3-202ENST00000297979 OR51A2Q8NGJ7 313 aa12.51□□□□□ -0.41
C9orf3-202ENST00000297979 OR1J2Q8NGS2 313 aa12.51□□□□□ -0.41
C9orf3-202ENST00000297979 RAB40AQ8WXH6 277 aa12.51□□□□□ -0.41
C9orf3-202ENST00000297979 RFT1Q96AA3 541 aa12.51□□□□□ -0.41
C9orf3-202ENST00000297979 C11orf54Q9H0W9 315 aaPredicted RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms