RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 ARRDC1-AS1Q9H2J1 176 aa21.14■□□□□ 0.98
TRIM54-201ENST00000296098 FBLN5Q9UBX5 448 aa21.14■□□□□ 0.98
TRIM54-201ENST00000296098 AMY2AP04746 511 aa21.14■□□□□ 0.97
TRIM54-201ENST00000296098 ITGB2P05107 769 aa21.14■□□□□ 0.97
TRIM54-201ENST00000296098 MELTFP08582 738 aa21.14■□□□□ 0.97
TRIM54-201ENST00000296098 ENDOGQ14249 297 aaKnown RBP21.14■□□□□ 0.97
TRIM54-201ENST00000296098 GFOD2Q3B7J2 385 aa21.14■□□□□ 0.97
TRIM54-201ENST00000296098 B3GNTL1Q67FW5 361 aaPredicted RBP21.14■□□□□ 0.97
TRIM54-201ENST00000296098 CHMP1BQ7LBR1 199 aa21.14■□□□□ 0.97
TRIM54-201ENST00000296098 OR5AS1Q8N127 324 aa21.14■□□□□ 0.97
TRIM54-201ENST00000296098 FTMTQ8N4E7 242 aa21.14■□□□□ 0.97
TRIM54-201ENST00000296098 NABP1Q96AH0 204 aa21.14■□□□□ 0.97
TRIM54-201ENST00000296098 ZPBPQ9BS86 351 aa21.14■□□□□ 0.97
TRIM54-201ENST00000296098 TINAGL1Q9GZM7 467 aaPredicted RBP21.14■□□□□ 0.97
TRIM54-201ENST00000296098 WIPF3A6NGB9 483 aa21.13■□□□□ 0.97
TRIM54-201ENST00000296098 DNPH1O43598 174 aa21.13■□□□□ 0.97
TRIM54-201ENST00000296098 OR2A4O95047 310 aa21.13■□□□□ 0.97
TRIM54-201ENST00000296098 CD74P04233 296 aa21.13■□□□□ 0.97
TRIM54-201ENST00000296098 CTSSP25774 331 aa21.13■□□□□ 0.97
TRIM54-201ENST00000296098 B3GALT5-AS1P59052 145 aa21.13■□□□□ 0.97
TRIM54-201ENST00000296098 TSPAN5P62079 268 aa21.13■□□□□ 0.97
TRIM54-201ENST00000296098 CCDC157Q569K6 752 aa21.13■□□□□ 0.97
TRIM54-201ENST00000296098 TEX261Q6UWH6 196 aa21.13■□□□□ 0.97
TRIM54-201ENST00000296098 IDO2Q6ZQW0 420 aa21.13■□□□□ 0.97
TRIM54-201ENST00000296098 TIPARPQ7Z3E1 657 aaKnown RBP21.13■□□□□ 0.97
TRIM54-201ENST00000296098 BEST3Q8N1M1 668 aa21.13■□□□□ 0.97
TRIM54-201ENST00000296098 FAM109AQ8N4B1 249 aa21.13■□□□□ 0.97
TRIM54-201ENST00000296098 GJC3Q8NFK1 279 aa21.13■□□□□ 0.97
TRIM54-201ENST00000296098 OR2A7Q96R45 310 aa21.13■□□□□ 0.97
TRIM54-201ENST00000296098 U3KQ87 197 aa21.13■□□□□ 0.97
TRIM54-201ENST00000296098 VPS13AQ96RL7 3174 aa21.13■□□□□ 0.97
TRIM54-201ENST00000296098 ZDBF2Q9HCK1 2354 aa21.13■□□□□ 0.97
TRIM54-201ENST00000296098 PMS2P1A4D2B8 440 aa21.12■□□□□ 0.97
TRIM54-201ENST00000296098 DHHO43323 396 aa21.12■□□□□ 0.97
TRIM54-201ENST00000296098 ENPP1P22413 925 aa21.12■□□□□ 0.97
TRIM54-201ENST00000296098 SSPNQ14714 243 aa21.12■□□□□ 0.97
TRIM54-201ENST00000296098 RAB11FIP2Q7L804 512 aa21.12■□□□□ 0.97
TRIM54-201ENST00000296098 FJX1Q86VR8 437 aa21.12■□□□□ 0.97
TRIM54-201ENST00000296098 ANGPTL5Q86XS5 388 aa21.12■□□□□ 0.97
TRIM54-201ENST00000296098 ESX1Q8N693 406 aa21.12■□□□□ 0.97
TRIM54-201ENST00000296098 CHST4Q8NCG5 386 aa21.12■□□□□ 0.97
TRIM54-201ENST00000296098 CMBLQ96DG6 245 aa21.12■□□□□ 0.97
TRIM54-201ENST00000296098 PGAM5Q96HS1 289 aa21.12■□□□□ 0.97
TRIM54-201ENST00000296098 HEXA-AS1Q9H8Q6 139 aa21.12■□□□□ 0.97
TRIM54-201ENST00000296098 FOXD3Q9UJU5 478 aaPredicted RBP21.12■□□□□ 0.97
TRIM54-201ENST00000296098 COL6A3P12111 3177 aa21.12■□□□□ 0.97
TRIM54-201ENST00000296098 TMEM14DPA8MWL7 114 aa21.12■□□□□ 0.97
TRIM54-201ENST00000296098 SMAD9O15198 467 aaKnown RBP21.12■□□□□ 0.97
TRIM54-201ENST00000296098 SSTR2P30874 369 aa21.12■□□□□ 0.97
TRIM54-201ENST00000296098 SUCLG1P53597 346 aaKnown RBP21.12■□□□□ 0.97
TRIM54-201ENST00000296098 GNG2P59768 71 aa21.12■□□□□ 0.97
TRIM54-201ENST00000296098 TRAPPC6BQ86SZ2 158 aa21.12■□□□□ 0.97
TRIM54-201ENST00000296098 YRDCQ86U90 279 aaKnown RBP21.12■□□□□ 0.97
TRIM54-201ENST00000296098 ZIC4Q8N9L1 334 aa21.12■□□□□ 0.97
TRIM54-201ENST00000296098 OR14L1PQ8NHC6 308 aa21.12■□□□□ 0.97
TRIM54-201ENST00000296098 KCNE4Q8WWG9 221 aa21.12■□□□□ 0.97
TRIM54-201ENST00000296098 INTS12Q96CB8 462 aaKnown RBP21.12■□□□□ 0.97
TRIM54-201ENST00000296098 SPACA5Q96QH8 159 aa21.12■□□□□ 0.97
TRIM54-201ENST00000296098 SLC25A21Q9BQT8 299 aaPredicted RBP21.12■□□□□ 0.97
TRIM54-201ENST00000296098 ULBP2Q9BZM5 246 aa21.12■□□□□ 0.97
TRIM54-201ENST00000296098 MRPS28Q9Y2Q9 187 aaKnown RBP21.12■□□□□ 0.97
TRIM54-201ENST00000296098 CDNFQ49AH0 187 aa21.11■□□□□ 0.97
TRIM54-201ENST00000296098 H3F3CQ6NXT2 135 aa21.11■□□□□ 0.97
TRIM54-201ENST00000296098 ZNF101Q8IZC7 436 aa21.11■□□□□ 0.97
TRIM54-201ENST00000296098 MUC20Q8N307 709 aaPredicted RBP21.11■□□□□ 0.97
TRIM54-201ENST00000296098 ZBTB44Q8NCP5 570 aa21.11■□□□□ 0.97
TRIM54-201ENST00000296098 CCDC107Q8WV48 283 aa21.11■□□□□ 0.97
TRIM54-201ENST00000296098 TAAR9Q96RI9 348 aa21.11■□□□□ 0.97
TRIM54-201ENST00000296098 NUDT16L1Q9BRJ7 211 aaKnown RBP21.11■□□□□ 0.97
TRIM54-201ENST00000296098 SF3B5Q9BWJ5 86 aaKnown RBP21.11■□□□□ 0.97
TRIM54-201ENST00000296098 RBM24Q9BX46 236 aaKnown RBP21.11■□□□□ 0.97
TRIM54-201ENST00000296098 ALX4Q9H161 411 aaPredicted RBP21.11■□□□□ 0.97
TRIM54-201ENST00000296098 POFUT1Q9H488 388 aa21.11■□□□□ 0.97
TRIM54-201ENST00000296098 FARSAQ9Y285 508 aaKnown RBP21.11■□□□□ 0.97
TRIM54-201ENST00000296098 TMEM82A0PJX8 343 aa21.11■□□□□ 0.97
TRIM54-201ENST00000296098 ZNF84P51523 738 aa21.11■□□□□ 0.97
TRIM54-201ENST00000296098 DHODHQ02127 395 aa21.11■□□□□ 0.97
TRIM54-201ENST00000296098 C4orf46Q504U0 113 aa21.11■□□□□ 0.97
TRIM54-201ENST00000296098 OR2W3Q7Z3T1 314 aa21.11■□□□□ 0.97
TRIM54-201ENST00000296098 C20orf196Q8IYI0 205 aa21.11■□□□□ 0.97
TRIM54-201ENST00000296098 LRRC18Q8N456 261 aa21.11■□□□□ 0.97
TRIM54-201ENST00000296098 HCKP08631 526 aa21.1■□□□□ 0.97
TRIM54-201ENST00000296098 ZNF735P0CB33 412 aa21.1■□□□□ 0.97
TRIM54-201ENST00000296098 RGS19P49795 217 aa21.1■□□□□ 0.97
TRIM54-201ENST00000296098 GSK3AP49840 483 aa21.1■□□□□ 0.97
TRIM54-201ENST00000296098 RAC3P60763 192 aa21.1■□□□□ 0.97
TRIM54-201ENST00000296098 HIST1H3AP68431 136 aa21.1■□□□□ 0.97
TRIM54-201ENST00000296098 MEF2DQ14814 521 aa21.1■□□□□ 0.97
TRIM54-201ENST00000296098 ACER2Q5QJU3 275 aa21.1■□□□□ 0.97
TRIM54-201ENST00000296098 HIST2H3PS2Q5TEC6 136 aa21.1■□□□□ 0.97
TRIM54-201ENST00000296098 GLIPR1L1Q6UWM5 242 aa21.1■□□□□ 0.97
TRIM54-201ENST00000296098 HIST2H3AQ71DI3 136 aa21.1■□□□□ 0.97
TRIM54-201ENST00000296098 RNF144BQ7Z419 303 aa21.1■□□□□ 0.97
TRIM54-201ENST00000296098 BPIFB2Q8N4F0 458 aa21.1■□□□□ 0.97
TRIM54-201ENST00000296098 ZNF680Q8NEM1 530 aa21.1■□□□□ 0.97
TRIM54-201ENST00000296098 OR2AK2Q8NG84 335 aa21.1■□□□□ 0.97
TRIM54-201ENST00000296098 OR14K1Q8NGZ2 314 aa21.1■□□□□ 0.97
TRIM54-201ENST00000296098 TNFAIP8L1Q8WVP5 186 aa21.1■□□□□ 0.97
TRIM54-201ENST00000296098 NECAB3Q96P71 396 aaPredicted RBP21.1■□□□□ 0.97
TRIM54-201ENST00000296098 DDA1Q9BW61 102 aa21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms