RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 YOD1Q5VVQ6 348 aaPredicted RBP12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 OR4S1Q8NGB4 309 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 TOE1Q96GM8 510 aaKnown RBP12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 H7C1C5 153 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 SYT5O00445 386 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 SP1P08047 785 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 OR1C1Q15619 314 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 ETV3LQ6ZN32 361 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 TCEAL8Q8IYN2 117 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 BANF2Q9H503 90 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 ZFC3H1O60293 1989 aaKnown RBP12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 MDC1Q14676 2089 aaKnown RBP12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 CDRT15L2A8MXV6 281 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 CCL11P51671 97 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 OR2B11Q5JQS5 317 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 OR5R1Q8NH85 324 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 SLC7A10Q9NS82 523 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 AMMECR1Q9Y4X0 333 aaPredicted RBP12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 NPTNQ9Y639 398 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 WNT7AO00755 349 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 FGF2P09038 288 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 IL23AQ9NPF7 189 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 SPATA31D1Q6ZQQ2 1576 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 ARFGEF2Q9Y6D5 1785 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 TMEM88Q6PEY1 159 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 ZNF775Q96BV0 537 aaPredicted RBP12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 HHIPQ96QV1 700 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 COX19Q49B96 90 aa12.71□□□□□ -0.37
CCDC88A-201ENST00000263630 CHST14Q8NCH0 376 aa12.71□□□□□ -0.37
CCDC88A-201ENST00000263630 OR1N2Q8NGR9 330 aa12.71□□□□□ -0.37
CCDC88A-201ENST00000263630 GATA6Q92908 595 aa12.71□□□□□ -0.37
CCDC88A-201ENST00000263630 OR52A4PA6NMU1 304 aa12.71□□□□□ -0.37
CCDC88A-201ENST00000263630 J3KTA2 159 aa12.71□□□□□ -0.37
CCDC88A-201ENST00000263630 PTHLHP12272 177 aa12.71□□□□□ -0.37
CCDC88A-201ENST00000263630 CD40P25942 277 aa12.71□□□□□ -0.37
CCDC88A-201ENST00000263630 MYBPHQ13203 477 aa12.71□□□□□ -0.37
CCDC88A-201ENST00000263630 TNFRSF13CQ96RJ3 184 aa12.71□□□□□ -0.37
CCDC88A-201ENST00000263630 LAIR1Q6GTX8 287 aa12.71□□□□□ -0.37
CCDC88A-201ENST00000263630 ZDHHC23Q8IYP9 409 aa12.71□□□□□ -0.37
CCDC88A-201ENST00000263630 OR2D3Q8NGH3 330 aa12.71□□□□□ -0.37
CCDC88A-201ENST00000263630 USP3Q9Y6I4 520 aa12.71□□□□□ -0.37
CCDC88A-201ENST00000263630 DCCP43146 1447 aa12.71□□□□□ -0.37
CCDC88A-201ENST00000263630 RPLP1P05386 114 aaKnown RBP12.71□□□□□ -0.37
CCDC88A-201ENST00000263630 TOMM34Q15785 309 aaPredicted RBP12.71□□□□□ -0.37
CCDC88A-201ENST00000263630 PHYHIPLQ96FC7 376 aa12.71□□□□□ -0.37
CCDC88A-201ENST00000263630 A3GALT2U3KPV4 340 aa12.71□□□□□ -0.37
CCDC88A-201ENST00000263630 OR1D5P58170 312 aa12.71□□□□□ -0.37
CCDC88A-201ENST00000263630 CLN3Q13286 438 aa12.71□□□□□ -0.37
CCDC88A-201ENST00000263630 ERASQ7Z444 233 aa12.71□□□□□ -0.37
CCDC88A-201ENST00000263630 CRYAAP02489 173 aa12.71□□□□□ -0.38
CCDC88A-201ENST00000263630 ACAA2P42765 397 aaKnown RBP12.71□□□□□ -0.38
CCDC88A-201ENST00000263630 MOB3BQ86TA1 216 aa12.71□□□□□ -0.38
CCDC88A-201ENST00000263630 OR4D10Q8NGI6 311 aa12.71□□□□□ -0.38
CCDC88A-201ENST00000263630 RAB24Q969Q5 203 aa12.71□□□□□ -0.38
CCDC88A-201ENST00000263630 NAA60Q9H7X0 242 aa12.71□□□□□ -0.38
CCDC88A-201ENST00000263630 ZNF346Q9UL40 294 aaKnown RBP12.71□□□□□ -0.38
CCDC88A-201ENST00000263630 MST1RQ04912 1400 aa12.71□□□□□ -0.38
CCDC88A-201ENST00000263630 ANKRD31Q8N7Z5 1873 aa12.71□□□□□ -0.38
CCDC88A-201ENST00000263630 CCSO14618 274 aa12.71□□□□□ -0.38
CCDC88A-201ENST00000263630 HCRTR1O43613 425 aa12.71□□□□□ -0.38
CCDC88A-201ENST00000263630 MMP11P24347 488 aa12.71□□□□□ -0.38
CCDC88A-201ENST00000263630 CCL14Q16627 93 aa12.71□□□□□ -0.38
CCDC88A-201ENST00000263630 ZNF260Q3ZCT1 412 aa12.71□□□□□ -0.38
CCDC88A-201ENST00000263630 MYPOPQ86VE0 399 aaPredicted RBP12.71□□□□□ -0.38
CCDC88A-201ENST00000263630 CELF2-AS1Q8N7Q2 184 aa12.71□□□□□ -0.38
CCDC88A-201ENST00000263630 NUP37Q8NFH4 326 aa12.71□□□□□ -0.38
CCDC88A-201ENST00000263630 PELI1Q96FA3 418 aa12.71□□□□□ -0.38
CCDC88A-201ENST00000263630 IL2RAP01589 272 aa12.71□□□□□ -0.38
CCDC88A-201ENST00000263630 BPIFA4PQ86YQ2 179 aa12.71□□□□□ -0.38
CCDC88A-201ENST00000263630 OR2I1PQ8NGU4 316 aa12.71□□□□□ -0.38
CCDC88A-201ENST00000263630 HGDQ93099 445 aa12.71□□□□□ -0.38
CCDC88A-201ENST00000263630 RNF2Q99496 336 aa12.71□□□□□ -0.38
CCDC88A-201ENST00000263630 OCIAD1Q9NX40 245 aa12.71□□□□□ -0.38
CCDC88A-201ENST00000263630 PRRC2BQ5JSZ5 2229 aaKnown RBP12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 ACP1P24666 158 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 HNRNPA1L2Q32P51 320 aaKnown RBP12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 GGTA1PQ4G0N0 100 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 EID2BQ96D98 161 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 GPR61Q9BZJ8 451 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 ADGRL4Q9HBW9 690 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 ANKRD61A6NGH8 418 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 TBX19O60806 448 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 SFTA3P0C7M3 94 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 CD82P27701 267 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 GCAP28676 217 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 RPL27P61353 136 aaKnown RBP12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 C19orf57Q0VDD7 668 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 ZNF816Q0VGE8 651 aaPredicted RBP12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 TGIF2LYQ8IUE0 185 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 OR10D4PQ8NGN7 298 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 TRAV34A0A0B4J273 112 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 H0YGG7 62 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 CD70P32970 193 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 TGIF2LXQ8IUE1 241 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 BAP18Q8IXM2 172 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 ANAPC16Q96DE5 110 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 CHRNA10Q9GZZ6 450 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 ONECUT1Q9UBC0 465 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 FCRL6Q6DN72 434 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 C5orf49A4QMS7 147 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms