RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 MED25Q71SY5 747 aa12.83□□□□□ -0.36
SDC1-201ENST00000254351 OR10D4PQ8NGN7 298 aa12.83□□□□□ -0.36
SDC1-201ENST00000254351 C16orf52Q8NHV5 167 aa12.83□□□□□ -0.36
SDC1-201ENST00000254351 ADAMTS17Q8TE56 1095 aa12.83□□□□□ -0.36
SDC1-201ENST00000254351 MARS2Q96GW9 593 aaKnown RBP12.83□□□□□ -0.36
SDC1-201ENST00000254351 GAL3ST4Q96RP7 486 aa12.83□□□□□ -0.36
SDC1-201ENST00000254351 C5orf66Q9H5L9 145 aa12.83□□□□□ -0.36
SDC1-201ENST00000254351 GDE1Q9NZC3 331 aa12.83□□□□□ -0.36
SDC1-201ENST00000254351 COA3Q9Y2R0 106 aaPredicted RBP12.83□□□□□ -0.36
SDC1-201ENST00000254351 NOSIPQ9Y314 301 aaKnown RBP12.83□□□□□ -0.36
SDC1-201ENST00000254351 WIF1Q9Y5W5 379 aa12.83□□□□□ -0.36
SDC1-201ENST00000254351 A0A0A6YYH2 397 aa12.83□□□□□ -0.36
SDC1-201ENST00000254351 A6NJ64 397 aa12.83□□□□□ -0.36
SDC1-201ENST00000254351 LILRB3O75022 631 aa12.83□□□□□ -0.36
SDC1-201ENST00000254351 AK1P00568 194 aa12.83□□□□□ -0.36
SDC1-201ENST00000254351 SULT1A1P50225 295 aa12.83□□□□□ -0.36
SDC1-201ENST00000254351 UNC119Q13432 240 aa12.83□□□□□ -0.36
SDC1-201ENST00000254351 NFATC4Q14934 902 aa12.83□□□□□ -0.36
SDC1-201ENST00000254351 TSC22D1Q15714 1073 aa12.83□□□□□ -0.36
SDC1-201ENST00000254351 EXD3Q8N9H8 876 aa12.83□□□□□ -0.36
SDC1-201ENST00000254351 ASB17Q8WXJ9 295 aa12.83□□□□□ -0.36
SDC1-201ENST00000254351 ADOQ96SZ5 270 aa12.83□□□□□ -0.36
SDC1-201ENST00000254351 PDE7BQ9NP56 450 aa12.83□□□□□ -0.36
SDC1-201ENST00000254351 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.83□□□□□ -0.36
SDC1-201ENST00000254351 TMEM269A0A1B0GVZ9 245 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 AP4M1O00189 453 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 HCRTR2O43614 444 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 FCGR3AP08637 254 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 AGAP20933 346 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 RPS4XP62701 263 aaKnown RBP12.82□□□□□ -0.36
SDC1-201ENST00000254351 ARFRP1Q13795 201 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 SSX9Q7RTT3 188 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 ZNF321PQ8N8H1 164 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 HSD17B11Q8NBQ5 300 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 MRPL22Q9NWU5 206 aaKnown RBP12.82□□□□□ -0.36
SDC1-201ENST00000254351 H0YIG0 161 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 XRCC2O43543 280 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 FBP1P09467 338 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 ZNF10P21506 573 aaPredicted RBP12.82□□□□□ -0.36
SDC1-201ENST00000254351 CST6Q15828 149 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 ACKR1Q16570 336 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 ZNF260Q3ZCT1 412 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 C2orf27AQ580R0 203 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 SLC18B1Q6NT16 456 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 ANGPTL5Q86XS5 388 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 ZFYVE21Q9BQ24 234 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 OR11A1Q9GZK7 315 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 FBXL17Q9UF56 701 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 TMEM14AQ9Y6G1 99 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 SOCS1O15524 211 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 PPM1AP35813 382 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 ALG11Q2TAA5 492 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 ZNF529Q6P280 563 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 CA13Q8N1Q1 262 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 NAXEQ8NCW5 288 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 CCDC54Q8NEL0 328 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 RAB3CQ96E17 227 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 SOX7Q9BT81 388 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 SLC17A9Q9BYT1 436 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 RTN4RQ9BZR6 473 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 METTL1Q9UBP6 276 aaKnown RBP12.82□□□□□ -0.36
SDC1-201ENST00000254351 HIF3AQ9Y2N7 669 aa12.82□□□□□ -0.36
SDC1-201ENST00000254351 WRBO00258 174 aa12.81□□□□□ -0.36
SDC1-201ENST00000254351 CT45A8P0DMV1 189 aa12.81□□□□□ -0.36
SDC1-201ENST00000254351 CT45A9P0DMV2 189 aa12.81□□□□□ -0.36
SDC1-201ENST00000254351 HLA-DOBP13765 273 aa12.81□□□□□ -0.36
SDC1-201ENST00000254351 DVL1P1P54792 670 aaPredicted RBP12.81□□□□□ -0.36
SDC1-201ENST00000254351 EMP2P54851 167 aa12.81□□□□□ -0.36
SDC1-201ENST00000254351 EGR3Q06889 387 aa12.81□□□□□ -0.36
SDC1-201ENST00000254351 ZNF674Q2M3X9 581 aa12.81□□□□□ -0.36
SDC1-201ENST00000254351 CT45A2Q5DJT8 189 aa12.81□□□□□ -0.36
SDC1-201ENST00000254351 EEF1A1P5Q5VTE0 462 aa12.81□□□□□ -0.36
SDC1-201ENST00000254351 HIST2H3AQ71DI3 136 aa12.81□□□□□ -0.36
SDC1-201ENST00000254351 DCXRQ7Z4W1 244 aa12.81□□□□□ -0.36
SDC1-201ENST00000254351 PRSS58Q8IYP2 241 aa12.81□□□□□ -0.36
SDC1-201ENST00000254351 PHOSPHO2Q8TCD6 241 aa12.81□□□□□ -0.36
SDC1-201ENST00000254351 ASB13Q8WXK3 278 aa12.81□□□□□ -0.36
SDC1-201ENST00000254351 SLC5A7Q9GZV3 580 aa12.81□□□□□ -0.36
SDC1-201ENST00000254351 KLF15Q9UIH9 416 aa12.81□□□□□ -0.36
SDC1-201ENST00000254351 HEBP2Q9Y5Z4 205 aa12.81□□□□□ -0.36
SDC1-201ENST00000254351 CCDC163A0A0D9SF12 145 aa12.81□□□□□ -0.36
SDC1-201ENST00000254351 IL2RAP01589 272 aa12.81□□□□□ -0.36
SDC1-201ENST00000254351 NDUFB7P17568 137 aa12.81□□□□□ -0.36
SDC1-201ENST00000254351 SERPINA2P20848 420 aa12.81□□□□□ -0.36
SDC1-201ENST00000254351 S100A2P29034 98 aa12.81□□□□□ -0.36
SDC1-201ENST00000254351 IGFALSP35858 605 aa12.81□□□□□ -0.36
SDC1-201ENST00000254351 IAH1Q2TAA2 248 aaPredicted RBP12.81□□□□□ -0.36
SDC1-201ENST00000254351 FAM166AQ6J272 317 aa12.81□□□□□ -0.36
SDC1-201ENST00000254351 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.81□□□□□ -0.36
SDC1-201ENST00000254351 TMEM230Q96A57 120 aa12.81□□□□□ -0.36
SDC1-201ENST00000254351 IER2Q9BTL4 223 aa12.81□□□□□ -0.36
SDC1-201ENST00000254351 HHLA2Q9UM44 414 aa12.81□□□□□ -0.36
SDC1-201ENST00000254351 C2orf72A6NCS6 295 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 RHPN2P1A8MT19 583 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 K7EPK0 472 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 DIRAS3O95661 229 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 OPN1LWP04000 364 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 CD5P06127 495 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 LINC00271P0C7V0 271 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 VSIG8P0DPA2 414 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms