RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 PSMB1P20618 241 aaKnown RBP12.18□□□□□ -0.46
LDLR-201ENST00000252444 ZFP36L2P47974 494 aaKnown RBP12.18□□□□□ -0.46
LDLR-201ENST00000252444 KLRB1Q12918 225 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 TNK1Q13470 666 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 PTP4A1Q93096 173 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 NOX3Q9HBY0 568 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 APOA2P02652 100 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 ZNF728P0DKX0 622 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 B4GALT1P15291 398 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 SLC25A53Q5H9E4 307 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 WFDC8Q8IUA0 241 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 OR1S1Q8NH92 325 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 PIGTQ969N2 578 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 ONECUT2O95948 504 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 FBXW9Q5XUX1 488 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 TMEM52Q8NDY8 209 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 LINC00470Q9BZP3 86 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 ACKR4Q9NPB9 350 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 PTP4A3O75365 173 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 CNOT4O95628 575 aaKnown RBP12.18□□□□□ -0.46
LDLR-201ENST00000252444 CD3EP07766 207 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 AKR1C4P17516 323 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 CD96P40200 585 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 GRK1Q15835 563 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 TBRG1Q3YBR2 411 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 STAC2Q6ZMT1 411 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 GABRG1Q8N1C3 465 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 SLC38A9Q8NBW4 561 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 OR51J1Q9H342 316 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 DUSP13Q9UII6 198 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 IGLV3-32A0A0A0MS00 114 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 OGG1O15527 345 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 ASAH2BP0C7U1 165 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 GP2P55259 537 aaKnown RBP12.17□□□□□ -0.46
LDLR-201ENST00000252444 MGAT2Q10469 447 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 PPP1R32Q7Z5V6 425 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 ACBD4Q8NC06 268 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 PLA2G12AQ9BZM1 189 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 RAB1BQ9H0U4 201 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 SLC6A15Q9H2J7 730 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 PLEKHF2Q9H8W4 249 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 B3GNT2Q9NY97 397 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 RNF24Q9Y225 148 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 DOCK4Q8N1I0 1966 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 ABCD4O14678 606 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 SLC2A10O95528 541 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 SFTPBP07988 381 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 APEX1P27695 318 aaKnown RBP12.17□□□□□ -0.46
LDLR-201ENST00000252444 GDNFP39905 211 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 MVDP53602 400 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 STEAP1BQ6NZ63 245 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 ARSKQ6UWY0 536 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 OR51F2Q8NH61 342 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 CA5BP1Q8WTZ4 195 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 CLEC2DQ9UHP7 191 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 KIF25Q9UIL4 384 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 TMEM82A0PJX8 343 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 EPPINO95925 133 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 ASCC1Q8N9N2 400 aaKnown RBP12.17□□□□□ -0.46
LDLR-201ENST00000252444 OR1J1Q8NGS3 322 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 PCYT1BQ9Y5K3 369 aaPredicted RBP12.17□□□□□ -0.46
LDLR-201ENST00000252444 SMIM30A4D0T7 59 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 AQP7O14520 342 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 ASAH1Q13510 395 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 IGFBP7Q16270 282 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 KDM8Q8N371 416 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 GPR35Q9HC97 309 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 GSKIPQ9P0R6 139 aa12.17□□□□□ -0.46
LDLR-201ENST00000252444 DHRS7CA6NNS2 312 aa12.16□□□□□ -0.46
LDLR-201ENST00000252444 SNU13P55769 128 aaKnown RBP12.16□□□□□ -0.46
LDLR-201ENST00000252444 SLC36A1Q7Z2H8 476 aa12.16□□□□□ -0.46
LDLR-201ENST00000252444 OSR2Q8N2R0 312 aa12.16□□□□□ -0.46
LDLR-201ENST00000252444 FOXN4Q96NZ1 517 aa12.16□□□□□ -0.46
LDLR-201ENST00000252444 TMEM38BQ9NVV0 291 aa12.16□□□□□ -0.46
LDLR-201ENST00000252444 CA11O75493 328 aa12.16□□□□□ -0.46
LDLR-201ENST00000252444 GAAP10253 952 aa12.16□□□□□ -0.46
LDLR-201ENST00000252444 FLVCR1-AS1Q8TAF5 88 aa12.16□□□□□ -0.46
LDLR-201ENST00000252444 WDFY2Q96P53 400 aa12.16□□□□□ -0.46
LDLR-201ENST00000252444 PBDC1Q9BVG4 233 aa12.16□□□□□ -0.46
LDLR-201ENST00000252444 GNG12Q9UBI6 72 aa12.16□□□□□ -0.46
LDLR-201ENST00000252444 NUP50Q9UKX7 468 aa12.16□□□□□ -0.46
LDLR-201ENST00000252444 PRKACAP17612 351 aa12.16□□□□□ -0.46
LDLR-201ENST00000252444 GLRA1P23415 457 aa12.16□□□□□ -0.46
LDLR-201ENST00000252444 KIR2DS2P43631 304 aa12.16□□□□□ -0.46
LDLR-201ENST00000252444 HSD17B8Q92506 261 aa12.16□□□□□ -0.46
LDLR-201ENST00000252444 GPR173Q9NS66 373 aa12.16□□□□□ -0.46
LDLR-201ENST00000252444 SNRPBP14678 240 aaKnown RBP12.16□□□□□ -0.46
LDLR-201ENST00000252444 ALOX5APP20292 161 aa12.16□□□□□ -0.46
LDLR-201ENST00000252444 KLF3P57682 345 aaPredicted RBP12.16□□□□□ -0.46
LDLR-201ENST00000252444 CREB3L2Q70SY1 520 aa12.16□□□□□ -0.46
LDLR-201ENST00000252444 ZNF767PQ75MW2 155 aa12.16□□□□□ -0.46
LDLR-201ENST00000252444 ELMOD2Q8IZ81 293 aa12.16□□□□□ -0.46
LDLR-201ENST00000252444 LGI3Q8N145 548 aa12.16□□□□□ -0.46
LDLR-201ENST00000252444 ZNF471Q9BX82 626 aaPredicted RBP12.16□□□□□ -0.46
LDLR-201ENST00000252444 OR14J1Q9UGF5 321 aa12.16□□□□□ -0.46
LDLR-201ENST00000252444 UBQLN2Q9UHD9 624 aa12.16□□□□□ -0.46
LDLR-201ENST00000252444 FBXO7Q9Y3I1 522 aa12.16□□□□□ -0.46
LDLR-201ENST00000252444 MTCL1Q9Y4B5 1905 aaKnown RBP12.16□□□□□ -0.46
LDLR-201ENST00000252444 GREB1Q4ZG55 1949 aa12.15□□□□□ -0.46
LDLR-201ENST00000252444 HPNP05981 417 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms