RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 SSC5DA1L4H1 1573 aa17.1■□□□□ 0.33
SMPD3-201ENST00000219334 TMEM235A6NFC5 223 aa17.1■□□□□ 0.33
SMPD3-201ENST00000219334 AIPO00170 330 aa17.1■□□□□ 0.33
SMPD3-201ENST00000219334 GLI4P10075 376 aa17.1■□□□□ 0.33
SMPD3-201ENST00000219334 RAB35Q15286 201 aa17.1■□□□□ 0.33
SMPD3-201ENST00000219334 BATFQ16520 125 aa17.1■□□□□ 0.33
SMPD3-201ENST00000219334 ST8SIA4Q92187 359 aa17.1■□□□□ 0.33
SMPD3-201ENST00000219334 TMEM230Q96A57 120 aa17.1■□□□□ 0.33
SMPD3-201ENST00000219334 MRGPRX3Q96LB0 322 aa17.1■□□□□ 0.33
SMPD3-201ENST00000219334 GABRG3Q99928 467 aa17.1■□□□□ 0.33
SMPD3-201ENST00000219334 RPS19P39019 145 aaKnown RBP17.09■□□□□ 0.33
SMPD3-201ENST00000219334 HNRNPFP52597 415 aaKnown RBP17.09■□□□□ 0.33
SMPD3-201ENST00000219334 CTU2Q2VPK5 515 aaKnown RBP17.09■□□□□ 0.33
SMPD3-201ENST00000219334 OR2Z1Q8NG97 314 aa17.09■□□□□ 0.33
SMPD3-201ENST00000219334 TAS2R45P59539 299 aa17.09■□□□□ 0.33
SMPD3-201ENST00000219334 GABARAPL3Q9BY60 117 aa17.09■□□□□ 0.33
SMPD3-201ENST00000219334 ESRP2Q9H6T0 727 aaKnown RBP17.09■□□□□ 0.33
SMPD3-201ENST00000219334 CACNA1SQ13698 1873 aa17.09■□□□□ 0.33
SMPD3-201ENST00000219334 ISL1P61371 349 aa17.09■□□□□ 0.33
SMPD3-201ENST00000219334 SPANXN5Q5MJ07 72 aa17.09■□□□□ 0.33
SMPD3-201ENST00000219334 CCDC71Q8IV32 467 aaPredicted RBP17.09■□□□□ 0.33
SMPD3-201ENST00000219334 TMEM104Q8NE00 496 aa17.09■□□□□ 0.33
SMPD3-201ENST00000219334 PKMYT1Q99640 499 aa17.09■□□□□ 0.33
SMPD3-201ENST00000219334 SEC22CQ9BRL7 303 aa17.09■□□□□ 0.33
SMPD3-201ENST00000219334 GABARAPL1Q9H0R8 117 aa17.09■□□□□ 0.33
SMPD3-201ENST00000219334 MYOZ1Q9NP98 299 aaPredicted RBP17.09■□□□□ 0.33
SMPD3-201ENST00000219334 TRPM3Q9HCF6 1732 aaPredicted RBP17.09■□□□□ 0.33
SMPD3-201ENST00000219334 SRP14P37108 136 aaKnown RBP17.09■□□□□ 0.33
SMPD3-201ENST00000219334 OSR2Q8N2R0 312 aa17.09■□□□□ 0.33
SMPD3-201ENST00000219334 OR2G3Q8NGZ4 309 aa17.09■□□□□ 0.33
SMPD3-201ENST00000219334 FYTTD1Q96QD9 318 aaKnown RBP17.09■□□□□ 0.33
SMPD3-201ENST00000219334 NIPSNAP3BQ9BS92 247 aa17.09■□□□□ 0.33
SMPD3-201ENST00000219334 LAMP3Q9UQV4 416 aa17.09■□□□□ 0.33
SMPD3-201ENST00000219334 PPIL1Q9Y3C6 166 aa17.09■□□□□ 0.33
SMPD3-201ENST00000219334 GPR37O15354 613 aa17.08■□□□□ 0.33
SMPD3-201ENST00000219334 SRSF5Q13243 272 aaKnown RBP17.08■□□□□ 0.33
SMPD3-201ENST00000219334 TMEM108Q6UXF1 575 aa17.08■□□□□ 0.33
SMPD3-201ENST00000219334 C17orf78Q8N4C9 275 aa17.08■□□□□ 0.33
SMPD3-201ENST00000219334 SLC25A46Q96AG3 418 aa17.08■□□□□ 0.33
SMPD3-201ENST00000219334 NDFIP1Q9BT67 221 aa17.08■□□□□ 0.33
SMPD3-201ENST00000219334 ZNF705GA8MUZ8 300 aaPredicted RBP17.08■□□□□ 0.33
SMPD3-201ENST00000219334 ALG1L2C9J202 215 aa17.08■□□□□ 0.33
SMPD3-201ENST00000219334 FABP7O15540 132 aa17.08■□□□□ 0.33
SMPD3-201ENST00000219334 CDAP32320 146 aa17.08■□□□□ 0.33
SMPD3-201ENST00000219334 UBE2IP63279 158 aaKnown RBP17.08■□□□□ 0.33
SMPD3-201ENST00000219334 FCN2Q15485 313 aa17.08■□□□□ 0.33
SMPD3-201ENST00000219334 MOB3BQ86TA1 216 aa17.08■□□□□ 0.33
SMPD3-201ENST00000219334 MITD1Q8WV92 249 aa17.08■□□□□ 0.33
SMPD3-201ENST00000219334 SMIM19Q96E16 107 aa17.08■□□□□ 0.33
SMPD3-201ENST00000219334 CACFD1Q9UGQ2 172 aa17.08■□□□□ 0.33
SMPD3-201ENST00000219334 RPL35P42766 123 aaKnown RBP17.08■□□□□ 0.32
SMPD3-201ENST00000219334 AGERQ15109 404 aa17.08■□□□□ 0.32
SMPD3-201ENST00000219334 OR10P1Q8NGE3 313 aa17.08■□□□□ 0.32
SMPD3-201ENST00000219334 NDUFB11Q9NX14 153 aa17.08■□□□□ 0.32
SMPD3-201ENST00000219334 MTCH1Q9NZJ7 389 aa17.08■□□□□ 0.32
SMPD3-201ENST00000219334 MICBQ29980 383 aa17.08■□□□□ 0.32
SMPD3-201ENST00000219334 C17orf107Q6ZR85 190 aa17.08■□□□□ 0.32
SMPD3-201ENST00000219334 SLC51BQ86UW2 128 aa17.08■□□□□ 0.32
SMPD3-201ENST00000219334 KDF1Q8NAX2 398 aaPredicted RBP17.08■□□□□ 0.32
SMPD3-201ENST00000219334 GALMQ96C23 342 aa17.08■□□□□ 0.32
SMPD3-201ENST00000219334 SLCO1C1Q9NYB5 712 aa17.08■□□□□ 0.32
SMPD3-201ENST00000219334 ST8SIA5O15466 376 aa17.07■□□□□ 0.32
SMPD3-201ENST00000219334 TXNL1O43396 289 aa17.07■□□□□ 0.32
SMPD3-201ENST00000219334 OR10A3P58181 314 aa17.07■□□□□ 0.32
SMPD3-201ENST00000219334 HFEQ30201 348 aa17.07■□□□□ 0.32
SMPD3-201ENST00000219334 OR52I2Q8NH67 350 aa17.07■□□□□ 0.32
SMPD3-201ENST00000219334 SFT2D1Q8WV19 159 aa17.07■□□□□ 0.32
SMPD3-201ENST00000219334 TINAGL1Q9GZM7 467 aaPredicted RBP17.07■□□□□ 0.32
SMPD3-201ENST00000219334 A4GNTQ9UNA3 340 aa17.07■□□□□ 0.32
SMPD3-201ENST00000219334 SHISA8B8ZZ34 492 aa17.07■□□□□ 0.32
SMPD3-201ENST00000219334 TOX3O15405 576 aaPredicted RBP17.07■□□□□ 0.32
SMPD3-201ENST00000219334 MAGEB4O15481 346 aaPredicted RBP17.07■□□□□ 0.32
SMPD3-201ENST00000219334 PPIHO43447 177 aaKnown RBP17.07■□□□□ 0.32
SMPD3-201ENST00000219334 FCGR2CP31995 323 aa17.07■□□□□ 0.32
SMPD3-201ENST00000219334 SOX18P35713 384 aa17.07■□□□□ 0.32
SMPD3-201ENST00000219334 CDK5R1Q15078 307 aa17.07■□□□□ 0.32
SMPD3-201ENST00000219334 TAAR6Q96RI8 345 aa17.07■□□□□ 0.32
SMPD3-201ENST00000219334 NARFLQ9H6Q4 476 aa17.07■□□□□ 0.32
SMPD3-201ENST00000219334 ONECUT1Q9UBC0 465 aa17.07■□□□□ 0.32
SMPD3-201ENST00000219334 ING1Q9UK53 422 aaPredicted RBP17.07■□□□□ 0.32
SMPD3-201ENST00000219334 ARRDC5A6NEK1 342 aa17.07■□□□□ 0.32
SMPD3-201ENST00000219334 ZFP92A6NM28 416 aa17.07■□□□□ 0.32
SMPD3-201ENST00000219334 SDCBPO00560 298 aaPredicted RBP17.07■□□□□ 0.32
SMPD3-201ENST00000219334 SSTP61278 116 aa17.07■□□□□ 0.32
SMPD3-201ENST00000219334 RHOUQ7L0Q8 258 aa17.07■□□□□ 0.32
SMPD3-201ENST00000219334 APOBEC4Q8WW27 367 aaKnown RBP17.07■□□□□ 0.32
SMPD3-201ENST00000219334 LHX9Q9NQ69 397 aa17.07■□□□□ 0.32
SMPD3-201ENST00000219334 K7EQS6 105 aa17.07■□□□□ 0.32
SMPD3-201ENST00000219334 PCBP4P57723 403 aaKnown RBP17.07■□□□□ 0.32
SMPD3-201ENST00000219334 PLA2G12AQ9BZM1 189 aa17.07■□□□□ 0.32
SMPD3-201ENST00000219334 EVPLQ92817 2033 aa17.07■□□□□ 0.32
SMPD3-201ENST00000219334 NHSQ6T4R5 1651 aa17.07■□□□□ 0.32
SMPD3-201ENST00000219334 NKX2-2O95096 273 aa17.07■□□□□ 0.32
SMPD3-201ENST00000219334 TOMM34Q15785 309 aaPredicted RBP17.07■□□□□ 0.32
SMPD3-201ENST00000219334 ADAT1Q9BUB4 502 aaKnown RBP17.07■□□□□ 0.32
SMPD3-201ENST00000219334 CTSVO60911 334 aa17.06■□□□□ 0.32
SMPD3-201ENST00000219334 OR5H8P0DN80 308 aa17.06■□□□□ 0.32
SMPD3-201ENST00000219334 JUNBP17275 347 aaPredicted RBP17.06■□□□□ 0.32
SMPD3-201ENST00000219334 OTPQ5XKR4 325 aa17.06■□□□□ 0.32
SMPD3-201ENST00000219334 CIB3Q96Q77 187 aaPredicted RBP17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms