RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 COQ7Q99807 217 aa12.43□□□□□ -0.42
SYNE2-228ENST00000639659 NUAK2Q9H093 628 aa12.43□□□□□ -0.42
SYNE2-228ENST00000639659 HDHD2Q9H0R4 259 aa12.43□□□□□ -0.42
SYNE2-228ENST00000639659 SEMA6AQ9H2E6 1030 aa12.43□□□□□ -0.42
SYNE2-228ENST00000639659 FN3KRPQ9HA64 309 aa12.43□□□□□ -0.42
SYNE2-228ENST00000639659 SMURF1Q9HCE7 757 aa12.43□□□□□ -0.42
SYNE2-228ENST00000639659 RNF7Q9UBF6 113 aa12.43□□□□□ -0.42
SYNE2-228ENST00000639659 FAM96BQ9Y3D0 163 aa12.43□□□□□ -0.42
SYNE2-228ENST00000639659 IER3IP1Q9Y5U9 82 aa12.43□□□□□ -0.42
SYNE2-228ENST00000639659 hCG_1807616A0A1W2PRN6 198 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 BTBD17A6NE02 478 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 A6NLC8 198 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 LGALS8O00214 317 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 AHCYL1O43865 530 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 CLPXO76031 633 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 ALX3O95076 343 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 GYPAP02724 150 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 LCATP04180 440 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 CSF1P09603 554 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 CA6P23280 308 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 SDHAP31040 664 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 PSMB10P40306 273 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 GATA4P43694 442 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 RPL15P61313 204 aaKnown RBP12.42□□□□□ -0.42
SYNE2-228ENST00000639659 SELENOWP63302 87 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 PRB3Q04118 309 aaPredicted RBP12.42□□□□□ -0.42
SYNE2-228ENST00000639659 DBPQ10586 325 aaPredicted RBP12.42□□□□□ -0.42
SYNE2-228ENST00000639659 POU4F2Q12837 409 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 MALLQ13021 153 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 GK2Q14410 553 aaPredicted RBP12.42□□□□□ -0.42
SYNE2-228ENST00000639659 KCNJ8Q15842 424 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 Q6ZSV7 163 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 PTCHD4Q6ZW05 846 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 MBOAT2Q6ZWT7 520 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 PGAP1Q75T13 922 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 MRPL21Q7Z2W9 205 aaKnown RBP12.42□□□□□ -0.42
SYNE2-228ENST00000639659 LNX2Q8N448 690 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 ST8SIA4Q92187 359 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 TSSK2Q96PF2 358 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 PITX2Q99697 317 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 ADAT1Q9BUB4 502 aaKnown RBP12.42□□□□□ -0.42
SYNE2-228ENST00000639659 TMEM120AQ9BXJ8 343 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 INTS9Q9NV88 658 aaKnown RBP12.42□□□□□ -0.42
SYNE2-228ENST00000639659 ONECUT1Q9UBC0 465 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 DNAJB11Q9UBS4 358 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 ATPIF1Q9UII2 106 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 LHFPL6Q9Y693 200 aa12.42□□□□□ -0.42
SYNE2-228ENST00000639659 TET2Q6N021 2002 aaPredicted RBP12.42□□□□□ -0.42
SYNE2-228ENST00000639659 IGHV3OR15-7A0A075B7D8 119 aa12.41□□□□□ -0.42
SYNE2-228ENST00000639659 A0A1W2PRD5 423 aa12.41□□□□□ -0.42
SYNE2-228ENST00000639659 A0A1W2PRF3 423 aa12.41□□□□□ -0.42
SYNE2-228ENST00000639659 A0A1W2PRM7 423 aa12.41□□□□□ -0.42
SYNE2-228ENST00000639659 G3V4G9 280 aa12.41□□□□□ -0.42
SYNE2-228ENST00000639659 FFAR1O14842 300 aa12.41□□□□□ -0.42
SYNE2-228ENST00000639659 OR10H3O60404 316 aa12.41□□□□□ -0.42
SYNE2-228ENST00000639659 NDUFB2O95178 105 aa12.41□□□□□ -0.42
SYNE2-228ENST00000639659 LIPFP07098 398 aa12.41□□□□□ -0.42
SYNE2-228ENST00000639659 CD200P41217 278 aa12.41□□□□□ -0.42
SYNE2-228ENST00000639659 IER3P46695 156 aa12.41□□□□□ -0.42
SYNE2-228ENST00000639659 EGR3Q06889 387 aa12.41□□□□□ -0.42
SYNE2-228ENST00000639659 GDPGP1Q6ZNW5 385 aa12.41□□□□□ -0.42
SYNE2-228ENST00000639659 FKBP9P1Q75LS8 142 aa12.41□□□□□ -0.42
SYNE2-228ENST00000639659 BTN2A1Q7KYR7 527 aa12.41□□□□□ -0.42
SYNE2-228ENST00000639659 Q8TCH9 128 aa12.41□□□□□ -0.42
SYNE2-228ENST00000639659 ERGIC1Q969X5 290 aa12.41□□□□□ -0.42
SYNE2-228ENST00000639659 SIRPDQ9H106 197 aa12.41□□□□□ -0.42
SYNE2-228ENST00000639659 DPAGT1Q9H3H5 408 aa12.41□□□□□ -0.42
SYNE2-228ENST00000639659 NMNAT1Q9HAN9 279 aaPredicted RBP12.41□□□□□ -0.42
SYNE2-228ENST00000639659 C1orf123Q9NWV4 160 aa12.41□□□□□ -0.42
SYNE2-228ENST00000639659 GMPR2Q9P2T1 348 aaKnown RBP12.41□□□□□ -0.42
SYNE2-228ENST00000639659 OOEPA6NGQ2 149 aa12.4□□□□□ -0.42
SYNE2-228ENST00000639659 FSTL3O95633 263 aa12.4□□□□□ -0.42
SYNE2-228ENST00000639659 GRPP07492 148 aa12.4□□□□□ -0.42
SYNE2-228ENST00000639659 GGT2P36268 569 aa12.4□□□□□ -0.42
SYNE2-228ENST00000639659 FGD3Q5JSP0 725 aa12.4□□□□□ -0.42
SYNE2-228ENST00000639659 GPR139Q6DWJ6 353 aa12.4□□□□□ -0.42
SYNE2-228ENST00000639659 DNM1P34Q6PK57 102 aa12.4□□□□□ -0.42
SYNE2-228ENST00000639659 CFAP77Q6ZQR2 320 aa12.4□□□□□ -0.42
SYNE2-228ENST00000639659 VMO1Q7Z5L0 202 aa12.4□□□□□ -0.42
SYNE2-228ENST00000639659 NAA40Q86UY6 237 aa12.4□□□□□ -0.42
SYNE2-228ENST00000639659 RNF113BQ8IZP6 322 aaKnown RBP12.4□□□□□ -0.42
SYNE2-228ENST00000639659 CELF2-AS1Q8N7Q2 184 aa12.4□□□□□ -0.42
SYNE2-228ENST00000639659 LRTOMTQ8WZ04 291 aa12.4□□□□□ -0.42
SYNE2-228ENST00000639659 RSRC1Q96IZ7 334 aaKnown RBP12.4□□□□□ -0.42
SYNE2-228ENST00000639659 NSRP1Q9H0G5 558 aaKnown RBP12.4□□□□□ -0.42
SYNE2-228ENST00000639659 VSX1Q9NZR4 365 aaPredicted RBP12.4□□□□□ -0.42
SYNE2-228ENST00000639659 TMEM5Q9Y2B1 443 aa12.4□□□□□ -0.42
SYNE2-228ENST00000639659 TRAV38-1A0A0B4J264 116 aa12.39□□□□□ -0.43
SYNE2-228ENST00000639659 ZNF816-ZNF321PA0A0X1KG74 233 aa12.39□□□□□ -0.43
SYNE2-228ENST00000639659 LOC100653049A0A140TA62 436 aa12.39□□□□□ -0.43
SYNE2-228ENST00000639659 ANKRD61A6NGH8 418 aa12.39□□□□□ -0.43
SYNE2-228ENST00000639659 GGT3PA6NGU5 568 aa12.39□□□□□ -0.43
SYNE2-228ENST00000639659 DCTN6O00399 190 aa12.39□□□□□ -0.43
SYNE2-228ENST00000639659 DVL1O14640 695 aa12.39□□□□□ -0.43
SYNE2-228ENST00000639659 GSTA4O15217 222 aa12.39□□□□□ -0.43
SYNE2-228ENST00000639659 KRT34O76011 436 aa12.39□□□□□ -0.43
SYNE2-228ENST00000639659 PPP1R3DO95685 299 aa12.39□□□□□ -0.43
SYNE2-228ENST00000639659 HLA-DQA2P01906 255 aa12.39□□□□□ -0.43
SYNE2-228ENST00000639659 ACSM4P0C7M7 580 aa12.39□□□□□ -0.43
SYNE2-228ENST00000639659 CDKN2AP42771 156 aaKnown RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms