RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 FAM214BQ7L5A3 538 aa14.74□□□□□ -0.05
CLN3-252ENST00000636907 ABHD12BQ7Z5M8 362 aaPredicted RBP14.74□□□□□ -0.05
CLN3-252ENST00000636907 SAMD12Q8N8I0 201 aa14.74□□□□□ -0.05
CLN3-252ENST00000636907 Q8NA96 180 aa14.74□□□□□ -0.05
CLN3-252ENST00000636907 SNRNP27Q8WVK2 155 aaKnown RBP14.74□□□□□ -0.05
CLN3-252ENST00000636907 GPR84Q9NQS5 396 aa14.74□□□□□ -0.05
CLN3-252ENST00000636907 ADAM30Q9UKF2 790 aa14.74□□□□□ -0.05
CLN3-252ENST00000636907 FABP12A6NFH5 140 aa14.73□□□□□ -0.05
CLN3-252ENST00000636907 TBX1O43435 398 aa14.73□□□□□ -0.05
CLN3-252ENST00000636907 CCL1P22362 96 aa14.73□□□□□ -0.05
CLN3-252ENST00000636907 MPGP29372 298 aa14.73□□□□□ -0.05
CLN3-252ENST00000636907 EVX1P49640 407 aa14.73□□□□□ -0.05
CLN3-252ENST00000636907 HGFACQ04756 655 aa14.73□□□□□ -0.05
CLN3-252ENST00000636907 MADCAM1Q13477 382 aa14.73□□□□□ -0.05
CLN3-252ENST00000636907 GFOD2Q3B7J2 385 aa14.73□□□□□ -0.05
CLN3-252ENST00000636907 PABPC1L2AQ5JQF8 200 aa14.73□□□□□ -0.05
CLN3-252ENST00000636907 NSUN5P2Q63ZY6 315 aa14.73□□□□□ -0.05
CLN3-252ENST00000636907 ZNF324BQ6AW86 544 aaPredicted RBP14.73□□□□□ -0.05
CLN3-252ENST00000636907 TFAP2EQ6VUC0 442 aa14.73□□□□□ -0.05
CLN3-252ENST00000636907 COMMD2Q86X83 199 aa14.73□□□□□ -0.05
CLN3-252ENST00000636907 OR1J2Q8NGS2 313 aa14.73□□□□□ -0.05
CLN3-252ENST00000636907 FGGYQ96C11 551 aa14.73□□□□□ -0.05
CLN3-252ENST00000636907 ADAT3Q96EY9 351 aaPredicted RBP14.73□□□□□ -0.05
CLN3-252ENST00000636907 OCEL1Q9H607 264 aa14.73□□□□□ -0.05
CLN3-252ENST00000636907 RNF121Q9H920 327 aa14.73□□□□□ -0.05
CLN3-252ENST00000636907 CKLFQ9UBR5 152 aa14.73□□□□□ -0.05
CLN3-252ENST00000636907 PRRC2CQ9Y520 2896 aaKnown RBP14.72□□□□□ -0.05
CLN3-252ENST00000636907 ZNF503-AS2A6NEH8 195 aa14.72□□□□□ -0.05
CLN3-252ENST00000636907 A6NIN4 97 aa14.72□□□□□ -0.05
CLN3-252ENST00000636907 FAM25AB3EWG3 89 aa14.72□□□□□ -0.05
CLN3-252ENST00000636907 FAM25CB3EWG5 89 aa14.72□□□□□ -0.05
CLN3-252ENST00000636907 FAM25GB3EWG6 89 aa14.72□□□□□ -0.05
CLN3-252ENST00000636907 UPK1BO75841 260 aa14.72□□□□□ -0.05
CLN3-252ENST00000636907 IL18BPO95998 194 aa14.72□□□□□ -0.05
CLN3-252ENST00000636907 IGLV3-1P01715 115 aa14.72□□□□□ -0.05
CLN3-252ENST00000636907 HLA-HP01893 362 aa14.72□□□□□ -0.05
CLN3-252ENST00000636907 EIF4EP06730 217 aaKnown RBP14.72□□□□□ -0.05
CLN3-252ENST00000636907 FAM87AP0C7U9 286 aa14.72□□□□□ -0.05
CLN3-252ENST00000636907 ABOP16442 354 aa14.72□□□□□ -0.05
CLN3-252ENST00000636907 TPTEP56180 551 aa14.72□□□□□ -0.05
CLN3-252ENST00000636907 CLDN12P56749 244 aa14.72□□□□□ -0.05
CLN3-252ENST00000636907 KRTCAP3Q53RY4 240 aa14.72□□□□□ -0.05
CLN3-252ENST00000636907 DRAM2Q6UX65 266 aa14.72□□□□□ -0.05
CLN3-252ENST00000636907 CNEP1R1Q8N9A8 125 aa14.72□□□□□ -0.05
CLN3-252ENST00000636907 OR51A2Q8NGJ7 313 aa14.72□□□□□ -0.05
CLN3-252ENST00000636907 OR1K1Q8NGR3 316 aa14.72□□□□□ -0.05
CLN3-252ENST00000636907 ZNF671Q8TAW3 534 aa14.72□□□□□ -0.05
CLN3-252ENST00000636907 LGALS14Q8TCE9 139 aa14.72□□□□□ -0.05
CLN3-252ENST00000636907 FAM71F1Q96KD3 344 aaPredicted RBP14.72□□□□□ -0.05
CLN3-252ENST00000636907 SOSTQ9BQB4 213 aa14.72□□□□□ -0.05
CLN3-252ENST00000636907 ABCB10Q9NRK6 738 aa14.72□□□□□ -0.05
CLN3-252ENST00000636907 CACNA1GO43497 2377 aa14.72□□□□□ -0.05
CLN3-252ENST00000636907 PTPRQQ9UMZ3 2332 aa14.72□□□□□ -0.05
CLN3-252ENST00000636907 C1QTNF9BB2RNN3 333 aa14.71□□□□□ -0.05
CLN3-252ENST00000636907 TPOP07202 933 aa14.71□□□□□ -0.05
CLN3-252ENST00000636907 C1QTNF9P0C862 333 aa14.71□□□□□ -0.05
CLN3-252ENST00000636907 AZGP1P25311 298 aaKnown RBP14.71□□□□□ -0.05
CLN3-252ENST00000636907 KIR2DL2P43627 348 aaPredicted RBP14.71□□□□□ -0.05
CLN3-252ENST00000636907 PSMD7P51665 324 aa14.71□□□□□ -0.05
CLN3-252ENST00000636907 FOXF2Q12947 444 aa14.71□□□□□ -0.05
CLN3-252ENST00000636907 LINC00303Q3SY05 128 aa14.71□□□□□ -0.05
CLN3-252ENST00000636907 OR2A2Q6IF42 318 aa14.71□□□□□ -0.05
CLN3-252ENST00000636907 DOK3Q7L591 496 aa14.71□□□□□ -0.05
CLN3-252ENST00000636907 LRRC28Q86X40 367 aaPredicted RBP14.71□□□□□ -0.05
CLN3-252ENST00000636907 CPEB3Q8NE35 698 aaKnown RBP14.71□□□□□ -0.05
CLN3-252ENST00000636907 LYZL4Q96KX0 146 aa14.71□□□□□ -0.05
CLN3-252ENST00000636907 SRRQ9GZT4 340 aa14.71□□□□□ -0.05
CLN3-252ENST00000636907 NOX3Q9HBY0 568 aa14.71□□□□□ -0.05
CLN3-252ENST00000636907 SPATA2Q9UM82 520 aa14.71□□□□□ -0.05
CLN3-252ENST00000636907 A0A0U1RQV5 110 aa14.71□□□□□ -0.06
CLN3-252ENST00000636907 TTLL8A6PVC2 850 aa14.71□□□□□ -0.06
CLN3-252ENST00000636907 TMEM127O75204 238 aa14.71□□□□□ -0.06
CLN3-252ENST00000636907 SNAI3Q3KNW1 292 aa14.71□□□□□ -0.06
CLN3-252ENST00000636907 HIKESHIQ53FT3 197 aa14.71□□□□□ -0.06
CLN3-252ENST00000636907 RTL6Q6ICC9 239 aa14.71□□□□□ -0.06
CLN3-252ENST00000636907 ANKRD16Q6P6B7 361 aa14.71□□□□□ -0.06
CLN3-252ENST00000636907 VWA1Q6PCB0 445 aa14.71□□□□□ -0.06
CLN3-252ENST00000636907 SEM1Q6ZVN7 128 aa14.71□□□□□ -0.06
CLN3-252ENST00000636907 CISD2Q8N5K1 135 aaKnown RBP14.71□□□□□ -0.06
CLN3-252ENST00000636907 LIN7BQ9HAP6 207 aa14.71□□□□□ -0.06
CLN3-252ENST00000636907 CYSLTR2Q9NS75 346 aa14.71□□□□□ -0.06
CLN3-252ENST00000636907 EXTL2Q9UBQ6 330 aa14.71□□□□□ -0.06
CLN3-252ENST00000636907 IGF2RP11717 2491 aa14.7□□□□□ -0.06
CLN3-252ENST00000636907 BOD1L1Q8NFC6 3051 aa14.7□□□□□ -0.06
CLN3-252ENST00000636907 A0A1B0GVG6 124 aa14.7□□□□□ -0.06
CLN3-252ENST00000636907 MBD3L4A6NDZ8 208 aaPredicted RBP14.7□□□□□ -0.06
CLN3-252ENST00000636907 MBD3L3A6NE82 208 aaPredicted RBP14.7□□□□□ -0.06
CLN3-252ENST00000636907 MBD3L5A6NJ08 208 aaPredicted RBP14.7□□□□□ -0.06
CLN3-252ENST00000636907 TDGF1P3P51864 188 aa14.7□□□□□ -0.06
CLN3-252ENST00000636907 SPOCK1Q08629 439 aa14.7□□□□□ -0.06
CLN3-252ENST00000636907 SF3B4Q15427 424 aaKnown RBP eCLIP14.7□□□□□ -0.062e-7■■■■□ 24.8
CLN3-252ENST00000636907 ZNF181Q2M3W8 571 aa14.7□□□□□ -0.06
CLN3-252ENST00000636907 XKRXQ6PP77 449 aa14.7□□□□□ -0.06
CLN3-252ENST00000636907 METAP1DQ6UB28 335 aaPredicted RBP14.7□□□□□ -0.06
CLN3-252ENST00000636907 CD163Q86VB7 1156 aa14.7□□□□□ -0.06
CLN3-252ENST00000636907 SERPINA12Q8IW75 414 aa14.7□□□□□ -0.06
CLN3-252ENST00000636907 PLPP7Q8NBV4 271 aa14.7□□□□□ -0.06
CLN3-252ENST00000636907 OR6K3Q8NGY3 331 aa14.7□□□□□ -0.06
CLN3-252ENST00000636907 OR14K1Q8NGZ2 314 aa14.7□□□□□ -0.06
CLN3-252ENST00000636907 MBD3L2Q8NHZ7 208 aaPredicted RBP14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms