RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 LAPTM4AQ15012 233 aa11.81□□□□□ -0.52
CLN3-249ENST00000636685 C11orf91Q3C1V1 193 aa11.81□□□□□ -0.52
CLN3-249ENST00000636685 NKAPLQ5M9Q1 402 aa11.81□□□□□ -0.52
CLN3-249ENST00000636685 OTPQ5XKR4 325 aa11.81□□□□□ -0.52
CLN3-249ENST00000636685 FAM90A1Q86YD7 464 aa11.81□□□□□ -0.52
CLN3-249ENST00000636685 ARMC8Q8IUR7 673 aa11.81□□□□□ -0.52
CLN3-249ENST00000636685 CMTM4Q8IZR5 234 aa11.81□□□□□ -0.52
CLN3-249ENST00000636685 PFN4Q8NHR9 129 aa11.81□□□□□ -0.52
CLN3-249ENST00000636685 ADAMTS16Q8TE57 1224 aa11.81□□□□□ -0.52
CLN3-249ENST00000636685 UBLCP1Q8WVY7 318 aaPredicted RBP11.81□□□□□ -0.52
CLN3-249ENST00000636685 OR5M11Q96RB7 305 aa11.81□□□□□ -0.52
CLN3-249ENST00000636685 DDOQ99489 341 aa11.81□□□□□ -0.52
CLN3-249ENST00000636685 SORT1Q99523 831 aa11.81□□□□□ -0.52
CLN3-249ENST00000636685 CPPED1Q9BRF8 314 aaPredicted RBP11.81□□□□□ -0.52
CLN3-249ENST00000636685 ZNF426Q9BUY5 554 aa11.81□□□□□ -0.52
CLN3-249ENST00000636685 FAM234AQ9H0X4 552 aa11.81□□□□□ -0.52
CLN3-249ENST00000636685 TXNIPQ9H3M7 391 aa11.81□□□□□ -0.52
CLN3-249ENST00000636685 PPCSQ9HAB8 311 aa11.81□□□□□ -0.52
CLN3-249ENST00000636685 PNPOQ9NVS9 261 aa11.81□□□□□ -0.52
CLN3-249ENST00000636685 HERC2O95714 4834 aa11.8□□□□□ -0.52
CLN3-249ENST00000636685 IGHV3OR15-7A0A075B7D8 119 aa11.8□□□□□ -0.52
CLN3-249ENST00000636685 TLDC2A0PJX2 215 aa11.8□□□□□ -0.52
CLN3-249ENST00000636685 FBP2O00757 339 aa11.8□□□□□ -0.52
CLN3-249ENST00000636685 SLC22A3O75751 556 aa11.8□□□□□ -0.52
CLN3-249ENST00000636685 FAHP16930 419 aa11.8□□□□□ -0.52
CLN3-249ENST00000636685 BMXP51813 675 aa11.8□□□□□ -0.52
CLN3-249ENST00000636685 UBE2E1P51965 193 aa11.8□□□□□ -0.52
CLN3-249ENST00000636685 LRRC75BQ2VPJ9 315 aa11.8□□□□□ -0.52
CLN3-249ENST00000636685 OR4D11Q8NGI4 311 aa11.8□□□□□ -0.52
CLN3-249ENST00000636685 OR51G2Q8NGK0 314 aa11.8□□□□□ -0.52
CLN3-249ENST00000636685 OR5L1Q8NGL2 311 aa11.8□□□□□ -0.52
CLN3-249ENST00000636685 AJUBAQ96IF1 538 aa11.8□□□□□ -0.52
CLN3-249ENST00000636685 MAELQ96JY0 434 aaKnown RBP11.8□□□□□ -0.52
CLN3-249ENST00000636685 ZNF583Q96ND8 569 aa11.8□□□□□ -0.52
CLN3-249ENST00000636685 PRSS27Q9BQR3 290 aa11.8□□□□□ -0.52
CLN3-249ENST00000636685 DCTN5Q9BTE1 182 aa11.8□□□□□ -0.52
CLN3-249ENST00000636685 EVA1AQ9H8M9 152 aa11.8□□□□□ -0.52
CLN3-249ENST00000636685 TRIM36Q9NQ86 728 aa11.8□□□□□ -0.52
CLN3-249ENST00000636685 INPP5EQ9NRR6 644 aa11.8□□□□□ -0.52
CLN3-249ENST00000636685 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.8□□□□□ -0.52
CLN3-249ENST00000636685 TRAPPC13A5PLN9 417 aa11.79□□□□□ -0.52
CLN3-249ENST00000636685 OR6C6A6NF89 314 aa11.79□□□□□ -0.52
CLN3-249ENST00000636685 DUS4LO95620 317 aaKnown RBP11.79□□□□□ -0.52
CLN3-249ENST00000636685 SERPINE1P05121 402 aa11.79□□□□□ -0.52
CLN3-249ENST00000636685 HOXB9P17482 250 aaPredicted RBP11.79□□□□□ -0.52
CLN3-249ENST00000636685 RGS6P49758 472 aa11.79□□□□□ -0.52
CLN3-249ENST00000636685 DCTN2Q13561 401 aaKnown RBP11.79□□□□□ -0.52
CLN3-249ENST00000636685 SCARB2Q14108 478 aa11.79□□□□□ -0.52
CLN3-249ENST00000636685 MSANTD1Q6ZTZ1 278 aa11.79□□□□□ -0.52
CLN3-249ENST00000636685 Q8N2B8 174 aa11.79□□□□□ -0.52
CLN3-249ENST00000636685 DTX3Q8N9I9 347 aa11.79□□□□□ -0.52
CLN3-249ENST00000636685 OR1F12Q8NHA8 337 aa11.79□□□□□ -0.52
CLN3-249ENST00000636685 GTF2H4Q92759 462 aa11.79□□□□□ -0.52
CLN3-249ENST00000636685 MPP4Q96JB8 637 aa11.79□□□□□ -0.52
CLN3-249ENST00000636685 MAP6Q96JE9 813 aa11.79□□□□□ -0.52
CLN3-249ENST00000636685 WNT10AQ9GZT5 417 aa11.79□□□□□ -0.52
CLN3-249ENST00000636685 WDR55Q9H6Y2 383 aaPredicted RBP11.79□□□□□ -0.52
CLN3-249ENST00000636685 NPIPB13A6NJU9 1138 aa11.78□□□□□ -0.52
CLN3-249ENST00000636685 NPIPB4C9JG80 1138 aa11.78□□□□□ -0.52
CLN3-249ENST00000636685 H7C1C5 153 aa11.78□□□□□ -0.52
CLN3-249ENST00000636685 J3QW42 95 aa11.78□□□□□ -0.52
CLN3-249ENST00000636685 SERPINB7O75635 380 aa11.78□□□□□ -0.52
CLN3-249ENST00000636685 MT-ND1P03886 318 aa11.78□□□□□ -0.52
CLN3-249ENST00000636685 CHRM2P08172 466 aa11.78□□□□□ -0.52
CLN3-249ENST00000636685 TSPAN19P0C672 248 aa11.78□□□□□ -0.52
CLN3-249ENST00000636685 LMO1P25800 156 aa11.78□□□□□ -0.52
CLN3-249ENST00000636685 RPL27P61353 136 aaKnown RBP11.78□□□□□ -0.52
CLN3-249ENST00000636685 LCN6P62502 163 aa11.78□□□□□ -0.52
CLN3-249ENST00000636685 ACSM1Q08AH1 577 aa11.78□□□□□ -0.52
CLN3-249ENST00000636685 DUSP7Q16829 419 aa11.78□□□□□ -0.52
CLN3-249ENST00000636685 CCDC92Q53HC0 331 aaPredicted RBP11.78□□□□□ -0.52
CLN3-249ENST00000636685 SLC2A7Q6PXP3 512 aa11.78□□□□□ -0.52
CLN3-249ENST00000636685 ZNF826PQ6ZT77 177 aa11.78□□□□□ -0.52
CLN3-249ENST00000636685 MSRB3Q8IXL7 192 aa11.78□□□□□ -0.52
CLN3-249ENST00000636685 GPR32P1Q8NGA4 272 aa11.78□□□□□ -0.52
CLN3-249ENST00000636685 OR9I1Q8NGQ6 314 aa11.78□□□□□ -0.52
CLN3-249ENST00000636685 APOBEC3DQ96AK3 386 aaPredicted RBP11.78□□□□□ -0.52
CLN3-249ENST00000636685 SGTBQ96EQ0 304 aa11.78□□□□□ -0.52
CLN3-249ENST00000636685 CCL13Q99616 98 aa11.78□□□□□ -0.52
CLN3-249ENST00000636685 ASCL2Q99929 193 aa11.78□□□□□ -0.52
CLN3-249ENST00000636685 WACQ9BTA9 647 aa11.78□□□□□ -0.52
CLN3-249ENST00000636685 CHID1Q9BWS9 393 aa11.78□□□□□ -0.52
CLN3-249ENST00000636685 MEGF9Q9H1U4 602 aa11.78□□□□□ -0.52
CLN3-249ENST00000636685 C1orf123Q9NWV4 160 aa11.78□□□□□ -0.52
CLN3-249ENST00000636685 SLC25A37Q9NYZ2 338 aa11.78□□□□□ -0.52
CLN3-249ENST00000636685 KAAG1Q9UBP8 84 aa11.78□□□□□ -0.52
CLN3-249ENST00000636685 PEX14O75381 377 aa11.77□□□□□ -0.53
CLN3-249ENST00000636685 SLC1A6P48664 564 aa11.77□□□□□ -0.53
CLN3-249ENST00000636685 CD83Q01151 205 aa11.77□□□□□ -0.53
CLN3-249ENST00000636685 OR8G1Q15617 311 aa11.77□□□□□ -0.53
CLN3-249ENST00000636685 GCSAMQ8N6F7 178 aa11.77□□□□□ -0.53
CLN3-249ENST00000636685 FNDC8Q8TC99 324 aa11.77□□□□□ -0.53
CLN3-249ENST00000636685 PIFOQ8TCI5 191 aa11.77□□□□□ -0.53
CLN3-249ENST00000636685 DPF1Q92782 380 aa11.77□□□□□ -0.53
CLN3-249ENST00000636685 HCAR1Q9BXC0 346 aa11.77□□□□□ -0.53
CLN3-249ENST00000636685 HAO1Q9UJM8 370 aa11.77□□□□□ -0.53
CLN3-249ENST00000636685 CA6P23280 308 aa11.76□□□□□ -0.53
CLN3-249ENST00000636685 POLR2JP52435 117 aaKnown RBP11.76□□□□□ -0.53
CLN3-249ENST00000636685 AQP6Q13520 282 aa11.76□□□□□ -0.53
CLN3-249ENST00000636685 TMEM95Q3KNT9 176 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms