RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 CDC42EP3Q9UKI2 254 aa15.25■□□□□ 0.03
CLN3-247ENST00000636351 ARFGEF3Q5TH69 2177 aa15.24■□□□□ 0.03
CLN3-247ENST00000636351 H7C417 338 aa15.24■□□□□ 0.03
CLN3-247ENST00000636351 ICMTO60725 284 aa15.24■□□□□ 0.03
CLN3-247ENST00000636351 LCATP04180 440 aa15.24■□□□□ 0.03
CLN3-247ENST00000636351 ERCC1P07992 297 aaPredicted RBP15.24■□□□□ 0.03
CLN3-247ENST00000636351 H2BFMP0C1H6 154 aa15.24■□□□□ 0.03
CLN3-247ENST00000636351 ACSM4P0C7M7 580 aa15.24■□□□□ 0.03
CLN3-247ENST00000636351 ZNF250P15622 560 aa15.24■□□□□ 0.03
CLN3-247ENST00000636351 SLC25A16P16260 332 aa15.24■□□□□ 0.03
CLN3-247ENST00000636351 HTR1FP30939 366 aa15.24■□□□□ 0.03
CLN3-247ENST00000636351 MPV17P39210 176 aa15.24■□□□□ 0.03
CLN3-247ENST00000636351 SLC15A1P46059 708 aa15.24■□□□□ 0.03
CLN3-247ENST00000636351 EVX1P49640 407 aa15.24■□□□□ 0.03
CLN3-247ENST00000636351 PRKXP51817 358 aa15.24■□□□□ 0.03
CLN3-247ENST00000636351 GRB2P62993 217 aaKnown RBP15.24■□□□□ 0.03
CLN3-247ENST00000636351 GGTLC2Q14390 218 aa15.24■□□□□ 0.03
CLN3-247ENST00000636351 ZNF283Q8N7M2 679 aa15.24■□□□□ 0.03
CLN3-247ENST00000636351 OR51G2Q8NGK0 314 aa15.24■□□□□ 0.03
CLN3-247ENST00000636351 OR5L1Q8NGL2 311 aa15.24■□□□□ 0.03
CLN3-247ENST00000636351 SNX33Q8WV41 574 aa15.24■□□□□ 0.03
CLN3-247ENST00000636351 RNF133Q8WVZ7 376 aa15.24■□□□□ 0.03
CLN3-247ENST00000636351 TRUB1Q8WWH5 349 aaKnown RBP15.24■□□□□ 0.03
CLN3-247ENST00000636351 UBE2FQ969M7 185 aa15.24■□□□□ 0.03
CLN3-247ENST00000636351 APOBEC3DQ96AK3 386 aaPredicted RBP15.24■□□□□ 0.03
CLN3-247ENST00000636351 MARS2Q96GW9 593 aaKnown RBP15.24■□□□□ 0.03
CLN3-247ENST00000636351 YIPF3Q9GZM5 350 aa15.24■□□□□ 0.03
CLN3-247ENST00000636351 POFUT1Q9H488 388 aa15.24■□□□□ 0.03
CLN3-247ENST00000636351 PTTG3PQ9NZH4 202 aa15.24■□□□□ 0.03
CLN3-247ENST00000636351 WARS2Q9UGM6 360 aaKnown RBP15.24■□□□□ 0.03
CLN3-247ENST00000636351 GPR160Q9UJ42 338 aa15.24■□□□□ 0.03
CLN3-247ENST00000636351 STARD10Q9Y365 291 aa15.24■□□□□ 0.03
CLN3-247ENST00000636351 N6AMT1Q9Y5N5 214 aa15.24■□□□□ 0.03
CLN3-247ENST00000636351 TMEM129A0AVI4 362 aa15.23■□□□□ 0.03
CLN3-247ENST00000636351 H3BSA7 217 aa15.23■□□□□ 0.03
CLN3-247ENST00000636351 TIMM8AO60220 97 aaPredicted RBP15.23■□□□□ 0.03
CLN3-247ENST00000636351 ADRA2AP08913 450 aa15.23■□□□□ 0.03
CLN3-247ENST00000636351 ZNF16P17020 682 aaPredicted RBP15.23■□□□□ 0.03
CLN3-247ENST00000636351 ATP6V1E1P36543 226 aa15.23■□□□□ 0.03
CLN3-247ENST00000636351 CX3CR1P49238 355 aa15.23■□□□□ 0.03
CLN3-247ENST00000636351 PPOXP50336 477 aa15.23■□□□□ 0.03
CLN3-247ENST00000636351 KRTAP27-1Q3LI81 207 aa15.23■□□□□ 0.03
CLN3-247ENST00000636351 HIST2H2ABQ8IUE6 130 aaPredicted RBP15.23■□□□□ 0.03
CLN3-247ENST00000636351 SLC35F2Q8IXU6 374 aa15.23■□□□□ 0.03
CLN3-247ENST00000636351 KLF14Q8TD94 323 aaPredicted RBP15.23■□□□□ 0.03
CLN3-247ENST00000636351 FAM168AQ92567 244 aa15.23■□□□□ 0.03
CLN3-247ENST00000636351 AMELYQ99218 206 aa15.23■□□□□ 0.03
CLN3-247ENST00000636351 DOK1Q99704 481 aa15.23■□□□□ 0.03
CLN3-247ENST00000636351 KCNJ15Q99712 375 aa15.23■□□□□ 0.03
CLN3-247ENST00000636351 APOL4Q9BPW4 351 aa15.23■□□□□ 0.03
CLN3-247ENST00000636351 BEX2Q9BXY8 128 aa15.23■□□□□ 0.03
CLN3-247ENST00000636351 TTTY10Q9BZA0 68 aa15.23■□□□□ 0.03
CLN3-247ENST00000636351 TPK1Q9H3S4 243 aa15.23■□□□□ 0.03
CLN3-247ENST00000636351 SLCO1C1Q9NYB5 712 aa15.23■□□□□ 0.03
CLN3-247ENST00000636351 KLHDC2Q9Y2U9 406 aa15.23■□□□□ 0.03
CLN3-247ENST00000636351 TMEM14AQ9Y6G1 99 aa15.23■□□□□ 0.03
CLN3-247ENST00000636351 E9PQ18 207 aa15.22■□□□□ 0.03
CLN3-247ENST00000636351 J3QW42 95 aa15.22■□□□□ 0.03
CLN3-247ENST00000636351 MPZL2O60487 215 aa15.22■□□□□ 0.03
CLN3-247ENST00000636351 ENTPD6O75354 484 aa15.22■□□□□ 0.03
CLN3-247ENST00000636351 APOL3O95236 402 aa15.22■□□□□ 0.03
CLN3-247ENST00000636351 MT-ND5P03915 603 aa15.22■□□□□ 0.03
CLN3-247ENST00000636351 ANXA2P07355 339 aaKnown RBP15.22■□□□□ 0.03
CLN3-247ENST00000636351 SLC2A1P11166 492 aa15.22■□□□□ 0.03
CLN3-247ENST00000636351 HCCSP53701 268 aa15.22■□□□□ 0.03
CLN3-247ENST00000636351 SNRPGP62308 76 aaKnown RBP15.22■□□□□ 0.03
CLN3-247ENST00000636351 POU4F2Q12837 409 aa15.22■□□□□ 0.03
CLN3-247ENST00000636351 MALLQ13021 153 aa15.22■□□□□ 0.03
CLN3-247ENST00000636351 MOGQ16653 247 aa15.22■□□□□ 0.03
CLN3-247ENST00000636351 RSPO1Q2MKA7 263 aaPredicted RBP15.22■□□□□ 0.03
CLN3-247ENST00000636351 MEDAGQ5VYS4 303 aa15.22■□□□□ 0.03
CLN3-247ENST00000636351 MBNL2Q5VZF2 373 aaKnown RBP15.22■□□□□ 0.03
CLN3-247ENST00000636351 DRAM2Q6UX65 266 aa15.22■□□□□ 0.03
CLN3-247ENST00000636351 KRT77Q7Z794 578 aa15.22■□□□□ 0.03
CLN3-247ENST00000636351 ENTHD1Q8IYW4 607 aa15.22■□□□□ 0.03
CLN3-247ENST00000636351 C10orf105Q8TEF2 133 aa15.22■□□□□ 0.03
CLN3-247ENST00000636351 SORCS2Q96PQ0 1159 aa15.22■□□□□ 0.03
CLN3-247ENST00000636351 C1QTNF5Q9BXJ0 243 aa15.22■□□□□ 0.03
CLN3-247ENST00000636351 RAB1BQ9H0U4 201 aa15.22■□□□□ 0.03
CLN3-247ENST00000636351 ADGRL4Q9HBW9 690 aa15.22■□□□□ 0.03
CLN3-247ENST00000636351 CLN6Q9NWW5 311 aa15.22■□□□□ 0.03
CLN3-247ENST00000636351 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP15.22■□□□□ 0.03
CLN3-247ENST00000636351 IGLV3-9A0A075B6K5 115 aa15.21■□□□□ 0.03
CLN3-247ENST00000636351 SNTNA6NMZ2 147 aa15.21■□□□□ 0.03
CLN3-247ENST00000636351 ZNF670-ZNF695F2Z2N8 137 aa15.21■□□□□ 0.03
CLN3-247ENST00000636351 DLGAP1O14490 977 aa15.21■□□□□ 0.03
CLN3-247ENST00000636351 SLC16A6O15403 523 aa15.21■□□□□ 0.03
CLN3-247ENST00000636351 LY6HO94772 140 aa15.21■□□□□ 0.03
CLN3-247ENST00000636351 ALOX5APP20292 161 aa15.21■□□□□ 0.03
CLN3-247ENST00000636351 OPRL1P41146 370 aa15.21■□□□□ 0.03
CLN3-247ENST00000636351 IL5RAQ01344 420 aa15.21■□□□□ 0.03
CLN3-247ENST00000636351 KCTD18Q6PI47 426 aaPredicted RBP15.21■□□□□ 0.03
CLN3-247ENST00000636351 LRRN1Q6UXK5 716 aa15.21■□□□□ 0.03
CLN3-247ENST00000636351 NAA40Q86UY6 237 aa15.21■□□□□ 0.03
CLN3-247ENST00000636351 DHRSXQ8N5I4 330 aa15.21■□□□□ 0.03
CLN3-247ENST00000636351 TBX5Q99593 518 aa15.21■□□□□ 0.03
CLN3-247ENST00000636351 TMEM160Q9NX00 188 aa15.21■□□□□ 0.03
CLN3-247ENST00000636351 HAO2Q9NYQ3 351 aa15.21■□□□□ 0.03
CLN3-247ENST00000636351 AASSQ9UDR5 926 aa15.21■□□□□ 0.03
CLN3-247ENST00000636351 IKZF2Q9UKS7 526 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms