RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 KLBQ86Z14 1044 aa15.44■□□□□ 0.06
CLN3-241ENST00000635861 SLC26A10Q8NG04 563 aa15.44■□□□□ 0.06
CLN3-241ENST00000635861 OR10AD1Q8NGE0 317 aa15.44■□□□□ 0.06
CLN3-241ENST00000635861 FANK1Q8TC84 345 aa15.44■□□□□ 0.06
CLN3-241ENST00000635861 NEIL1Q96FI4 390 aaPredicted RBP15.44■□□□□ 0.06
CLN3-241ENST00000635861 ERMAPQ96PL5 475 aaPredicted RBP15.44■□□□□ 0.06
CLN3-241ENST00000635861 VCX3BQ9H321 246 aa15.44■□□□□ 0.06
CLN3-241ENST00000635861 TMEM100Q9NV29 134 aa15.44■□□□□ 0.06
CLN3-241ENST00000635861 NOP16Q9Y3C1 178 aaKnown RBP15.44■□□□□ 0.06
CLN3-241ENST00000635861 DNAJC9-AS1A6NH13 148 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 MLNRO43193 412 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 CIB2O75838 187 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 FPR3P25089 353 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 IFNGR2P38484 337 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 VHLP40337 213 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 CENPAP49450 140 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 MXRA7P84157 204 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 PAX2Q02962 417 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 ZNF404Q494X3 552 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 LEG1Q6P5S2 330 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 C16orf89Q6UX73 402 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 NLRC3Q7RTR2 1065 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 ZBTB46Q86UZ6 589 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 UPRTQ96BW1 309 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 MS4A7Q9GZW8 240 aaPredicted RBP15.43■□□□□ 0.06
CLN3-241ENST00000635861 OR52D1Q9H346 318 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 KCNG2Q9UJ96 466 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 IGHV2-70DA0A0C4DH43 119 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 DCTN6O00399 190 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 GADD45GO95257 159 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 PPP1R3DO95685 299 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 RNASE1P07998 156 aaKnown RBP15.43■□□□□ 0.06
CLN3-241ENST00000635861 CD80P33681 288 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 MALLQ13021 153 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 BAMBIQ13145 260 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 SLC18B1Q6NT16 456 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 DEFB107AQ8IZN7 70 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 OR6V1Q8N148 313 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 PARP8Q8N3A8 854 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 OR8B3Q8NGG8 313 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 OR52E2Q8NGJ4 325 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 OR2AJ1Q8NGZ0 328 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 ZNF420Q8TAQ5 688 aaPredicted RBP15.43■□□□□ 0.06
CLN3-241ENST00000635861 Q8TCH9 128 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 RAB40AQ8WXH6 277 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 SLC25A28Q96A46 364 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 DACT3Q96B18 629 aaPredicted RBP15.43■□□□□ 0.06
CLN3-241ENST00000635861 PYURFQ96I23 114 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 TSSK2Q96PF2 358 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 OR8B2Q96RD0 313 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 ATF6BQ99941 703 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 SLC22A4Q9H015 551 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 ZNF696Q9H7X3 374 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 MAGEL2Q9UJ55 1249 aa15.43■□□□□ 0.06
CLN3-241ENST00000635861 CYB5R3P00387 301 aaPredicted RBP15.42■□□□□ 0.06
CLN3-241ENST00000635861 PLATP00750 562 aa15.42■□□□□ 0.06
CLN3-241ENST00000635861 SEMG1P04279 462 aa15.42■□□□□ 0.06
CLN3-241ENST00000635861 ACSM4P0C7M7 580 aa15.42■□□□□ 0.06
CLN3-241ENST00000635861 IRF2P14316 349 aa15.42■□□□□ 0.06
CLN3-241ENST00000635861 HNRNPA0Q13151 305 aaKnown RBP15.42■□□□□ 0.06
CLN3-241ENST00000635861 BLMHQ13867 455 aa15.42■□□□□ 0.06
CLN3-241ENST00000635861 MEP1BQ16820 701 aa15.42■□□□□ 0.06
CLN3-241ENST00000635861 PRR31Q5SQ13 230 aa15.42■□□□□ 0.06
CLN3-241ENST00000635861 OTPQ5XKR4 325 aa15.42■□□□□ 0.06
CLN3-241ENST00000635861 DCDC5Q6ZRR9 648 aa15.42■□□□□ 0.06
CLN3-241ENST00000635861 MOGAT3Q86VF5 341 aa15.42■□□□□ 0.06
CLN3-241ENST00000635861 OR52J3Q8NH60 311 aa15.42■□□□□ 0.06
CLN3-241ENST00000635861 NMNAT3Q96T66 252 aa15.42■□□□□ 0.06
CLN3-241ENST00000635861 TMEM246Q9BRR3 403 aa15.42■□□□□ 0.06
CLN3-241ENST00000635861 CDADC1Q9BWV3 514 aa15.42■□□□□ 0.06
CLN3-241ENST00000635861 SRA1Q9HD15 236 aaKnown RBP15.42■□□□□ 0.06
CLN3-241ENST00000635861 CYB5R1Q9UHQ9 305 aa15.42■□□□□ 0.06
CLN3-241ENST00000635861 TRRAPQ9Y4A5 3859 aa15.41■□□□□ 0.06
CLN3-241ENST00000635861 POM121CA8CG34 1229 aa15.41■□□□□ 0.06
CLN3-241ENST00000635861 H0YL77 283 aa15.41■□□□□ 0.06
CLN3-241ENST00000635861 PHYHO14832 338 aa15.41■□□□□ 0.06
CLN3-241ENST00000635861 DIRAS1O95057 198 aa15.41■□□□□ 0.06
CLN3-241ENST00000635861 RPSAP08865 295 aaKnown RBP15.41■□□□□ 0.06
CLN3-241ENST00000635861 NOS3P29474 1203 aa15.41■□□□□ 0.06
CLN3-241ENST00000635861 CD200P41217 278 aa15.41■□□□□ 0.06
CLN3-241ENST00000635861 BPIFB3P59826 476 aa15.41■□□□□ 0.06
CLN3-241ENST00000635861 IL13RA1P78552 427 aa15.41■□□□□ 0.06
CLN3-241ENST00000635861 GK2Q14410 553 aaPredicted RBP15.41■□□□□ 0.06
CLN3-241ENST00000635861 RSPO1Q2MKA7 263 aaPredicted RBP15.41■□□□□ 0.06
CLN3-241ENST00000635861 RPL13AP3Q6NVV1 102 aa15.41■□□□□ 0.06
CLN3-241ENST00000635861 BHLHE23Q8NDY6 225 aa15.41■□□□□ 0.06
CLN3-241ENST00000635861 OR11L1Q8NGX0 322 aa15.41■□□□□ 0.06
CLN3-241ENST00000635861 PITX2Q99697 317 aa15.41■□□□□ 0.06
CLN3-241ENST00000635861 IFT27Q9BW83 186 aa15.41■□□□□ 0.06
CLN3-241ENST00000635861 RPRD1BQ9NQG5 326 aaKnown RBP15.41■□□□□ 0.06
CLN3-241ENST00000635861 ADA2Q9NZK5 511 aa15.41■□□□□ 0.06
CLN3-241ENST00000635861 PCDHGB1Q9Y5G3 927 aa15.41■□□□□ 0.06
CLN3-241ENST00000635861 KIR2DS1A0A191URI9 304 aa15.4■□□□□ 0.06
CLN3-241ENST00000635861 F5H5P2 479 aa15.4■□□□□ 0.06
CLN3-241ENST00000635861 OR10H3O60404 316 aa15.4■□□□□ 0.06
CLN3-241ENST00000635861 GPANK1O95872 356 aa15.4■□□□□ 0.06
CLN3-241ENST00000635861 HSD17B1P14061 328 aa15.4■□□□□ 0.06
CLN3-241ENST00000635861 HIST1H1CP16403 213 aaKnown RBP15.4■□□□□ 0.06
CLN3-241ENST00000635861 PITPNBP48739 271 aa15.4■□□□□ 0.06
CLN3-241ENST00000635861 NPY4RP50391 375 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms