RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 YIPF3Q9GZM5 350 aa17.66■□□□□ 0.42
CLN3-240ENST00000631023 SP140LQ9H930 580 aa17.66■□□□□ 0.42
CLN3-240ENST00000631023 DYSFO75923 2080 aa17.65■□□□□ 0.42
CLN3-240ENST00000631023 SLC22A31A6NKX4 558 aa17.65■□□□□ 0.42
CLN3-240ENST00000631023 M0R129 80 aa17.65■□□□□ 0.42
CLN3-240ENST00000631023 ADH4P08319 380 aa17.65■□□□□ 0.42
CLN3-240ENST00000631023 SELEP16581 610 aa17.65■□□□□ 0.42
CLN3-240ENST00000631023 GIFP27352 417 aa17.65■□□□□ 0.42
CLN3-240ENST00000631023 CDC42P60953 191 aa17.65■□□□□ 0.42
CLN3-240ENST00000631023 TSTQ16762 297 aaKnown RBP17.65■□□□□ 0.42
CLN3-240ENST00000631023 CLEC9AQ6UXN8 241 aa17.65■□□□□ 0.42
CLN3-240ENST00000631023 HIST2H2ABQ8IUE6 130 aaPredicted RBP17.65■□□□□ 0.42
CLN3-240ENST00000631023 GID4Q8IVV7 300 aa17.65■□□□□ 0.42
CLN3-240ENST00000631023 ZNF283Q8N7M2 679 aa17.65■□□□□ 0.42
CLN3-240ENST00000631023 OR8J1Q8NGP2 316 aa17.65■□□□□ 0.42
CLN3-240ENST00000631023 EGLN1Q9GZT9 426 aa17.65■□□□□ 0.42
CLN3-240ENST00000631023 LAMP5Q9UJQ1 280 aa17.65■□□□□ 0.42
CLN3-240ENST00000631023 CCDC182A6NF36 153 aa17.64■□□□□ 0.41
CLN3-240ENST00000631023 ZSCAN5BA6NJL1 495 aa17.64■□□□□ 0.41
CLN3-240ENST00000631023 VWC2LB2RUY7 222 aa17.64■□□□□ 0.41
CLN3-240ENST00000631023 IGHV1-46P01743 117 aa17.64■□□□□ 0.41
CLN3-240ENST00000631023 H2BFMP0C1H6 154 aa17.64■□□□□ 0.41
CLN3-240ENST00000631023 ACHEP22303 614 aa17.64■□□□□ 0.41
CLN3-240ENST00000631023 USF1P22415 310 aaPredicted RBP17.64■□□□□ 0.41
CLN3-240ENST00000631023 TNFSF4P23510 183 aa17.64■□□□□ 0.41
CLN3-240ENST00000631023 NR4A2P43354 598 aa17.64■□□□□ 0.41
CLN3-240ENST00000631023 AADACL4Q5VUY2 407 aa17.64■□□□□ 0.41
CLN3-240ENST00000631023 MAPK1IP1LQ8NDC0 245 aa17.64■□□□□ 0.41
CLN3-240ENST00000631023 GTF3AQ92664 365 aaKnown RBP17.64■□□□□ 0.41
CLN3-240ENST00000631023 ZNF582Q96NG8 517 aaPredicted RBP17.64■□□□□ 0.41
CLN3-240ENST00000631023 SMR3AQ99954 134 aa17.64■□□□□ 0.41
CLN3-240ENST00000631023 CHODLQ9H9P2 273 aa17.64■□□□□ 0.41
CLN3-240ENST00000631023 SAP30LQ9HAJ7 183 aa17.64■□□□□ 0.41
CLN3-240ENST00000631023 MSL2Q9HCI7 577 aa17.64■□□□□ 0.41
CLN3-240ENST00000631023 TMEM14AQ9Y6G1 99 aa17.64■□□□□ 0.41
CLN3-240ENST00000631023 NCR1O76036 304 aa17.63■□□□□ 0.41
CLN3-240ENST00000631023 LOXL1Q08397 574 aaPredicted RBP17.63■□□□□ 0.41
CLN3-240ENST00000631023 CDK5R2Q13319 367 aa17.63■□□□□ 0.41
CLN3-240ENST00000631023 GK2Q14410 553 aaPredicted RBP17.63■□□□□ 0.41
CLN3-240ENST00000631023 ZIK1Q3SY52 487 aaPredicted RBP17.63■□□□□ 0.41
CLN3-240ENST00000631023 OR2T2Q6IF00 324 aa17.63■□□□□ 0.41
CLN3-240ENST00000631023 PGAP1Q75T13 922 aa17.63■□□□□ 0.41
CLN3-240ENST00000631023 MRPL21Q7Z2W9 205 aaKnown RBP17.63■□□□□ 0.41
CLN3-240ENST00000631023 TRUB1Q8WWH5 349 aaKnown RBP17.63■□□□□ 0.41
CLN3-240ENST00000631023 HRASLS5Q96KN8 279 aa17.63■□□□□ 0.41
CLN3-240ENST00000631023 CNN2Q99439 309 aaKnown RBP17.63■□□□□ 0.41
CLN3-240ENST00000631023 GSX1Q9H4S2 264 aaPredicted RBP17.63■□□□□ 0.41
CLN3-240ENST00000631023 IMPAD1Q9NX62 359 aa17.63■□□□□ 0.41
CLN3-240ENST00000631023 TANC2Q9HCD6 1990 aa17.63■□□□□ 0.41
CLN3-240ENST00000631023 LYNX1G3V0Z9 82 aa17.62■□□□□ 0.41
CLN3-240ENST00000631023 LYNX1P0DP58 116 aa17.62■□□□□ 0.41
CLN3-240ENST00000631023 ALOX5APP20292 161 aa17.62■□□□□ 0.41
CLN3-240ENST00000631023 COL8A2P25067 703 aa17.62■□□□□ 0.41
CLN3-240ENST00000631023 OPRL1P41146 370 aa17.62■□□□□ 0.41
CLN3-240ENST00000631023 CX3CR1P49238 355 aa17.62■□□□□ 0.41
CLN3-240ENST00000631023 GGTLC2Q14390 218 aa17.62■□□□□ 0.41
CLN3-240ENST00000631023 BCDIN3DQ7Z5W3 292 aaKnown RBP17.62■□□□□ 0.41
CLN3-240ENST00000631023 OR8G5Q8NG78 346 aa17.62■□□□□ 0.41
CLN3-240ENST00000631023 AMELYQ99218 206 aa17.62■□□□□ 0.41
CLN3-240ENST00000631023 BPESC1Q9GZL8 116 aa17.62■□□□□ 0.41
CLN3-240ENST00000631023 HAO2Q9NYQ3 351 aa17.62■□□□□ 0.41
CLN3-240ENST00000631023 N6AMT1Q9Y5N5 214 aa17.62■□□□□ 0.41
CLN3-240ENST00000631023 HIVEP2P31629 2446 aa17.62■□□□□ 0.41
CLN3-240ENST00000631023 LY6G6DO95868 133 aa17.62■□□□□ 0.41
CLN3-240ENST00000631023 ANXA2P07355 339 aaKnown RBP17.62■□□□□ 0.41
CLN3-240ENST00000631023 MRPL3P09001 348 aaKnown RBP17.62■□□□□ 0.41
CLN3-240ENST00000631023 CRYBB2P43320 205 aa17.62■□□□□ 0.41
CLN3-240ENST00000631023 TMEM33P57088 247 aa17.62■□□□□ 0.41
CLN3-240ENST00000631023 RIN1Q13671 783 aa17.62■□□□□ 0.41
CLN3-240ENST00000631023 SNAI3Q3KNW1 292 aa17.62■□□□□ 0.41
CLN3-240ENST00000631023 KCTD18Q6PI47 426 aaPredicted RBP17.62■□□□□ 0.41
CLN3-240ENST00000631023 KRT77Q7Z794 578 aa17.62■□□□□ 0.41
CLN3-240ENST00000631023 OR5AS1Q8N127 324 aa17.62■□□□□ 0.41
CLN3-240ENST00000631023 OR2Z1Q8NG97 314 aa17.62■□□□□ 0.41
CLN3-240ENST00000631023 OR13G1Q8NGZ3 307 aa17.62■□□□□ 0.41
CLN3-240ENST00000631023 FAM81AQ8TBF8 368 aa17.62■□□□□ 0.41
CLN3-240ENST00000631023 RFKQ969G6 155 aa17.62■□□□□ 0.41
CLN3-240ENST00000631023 ELMOD3Q96FG2 381 aa17.62■□□□□ 0.41
CLN3-240ENST00000631023 SLC29A1Q99808 456 aa17.62■□□□□ 0.41
CLN3-240ENST00000631023 NIPAL2Q9H841 368 aa17.62■□□□□ 0.41
CLN3-240ENST00000631023 WARS2Q9UGM6 360 aaKnown RBP17.62■□□□□ 0.41
CLN3-240ENST00000631023 A0A096LNT2 108 aa17.61■□□□□ 0.41
CLN3-240ENST00000631023 IGHV1-69-2A0A0G2JMI3 117 aa17.61■□□□□ 0.41
CLN3-240ENST00000631023 IQCF6A8MYZ5 107 aa17.61■□□□□ 0.41
CLN3-240ENST00000631023 CDC14BO60729 498 aa17.61■□□□□ 0.41
CLN3-240ENST00000631023 CD55P08174 381 aa17.61■□□□□ 0.41
CLN3-240ENST00000631023 TNFAIP6P98066 277 aaPredicted RBP17.61■□□□□ 0.41
CLN3-240ENST00000631023 USP51Q70EK9 711 aa17.61■□□□□ 0.41
CLN3-240ENST00000631023 OR52H1Q8NGJ2 320 aa17.61■□□□□ 0.41
CLN3-240ENST00000631023 ASB17Q8WXJ9 295 aa17.61■□□□□ 0.41
CLN3-240ENST00000631023 MNTQ99583 582 aa17.61■□□□□ 0.41
CLN3-240ENST00000631023 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP17.6■□□□□ 0.417e-9■■□□□ 13.5
CLN3-240ENST00000631023 ANKRD65E5RJM6 399 aa17.6■□□□□ 0.41
CLN3-240ENST00000631023 XRCC2O43543 280 aa17.6■□□□□ 0.41
CLN3-240ENST00000631023 HEXAP06865 529 aa17.6■□□□□ 0.41
CLN3-240ENST00000631023 SLC2A1P11166 492 aa17.6■□□□□ 0.41
CLN3-240ENST00000631023 HCCSP53701 268 aa17.6■□□□□ 0.41
CLN3-240ENST00000631023 TMED1Q13445 227 aa17.6■□□□□ 0.41
CLN3-240ENST00000631023 HFEQ30201 348 aa17.6■□□□□ 0.41
CLN3-240ENST00000631023 DEGS2Q6QHC5 323 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms