RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 LIMS3P0CW19 117 aa16.95■□□□□ 0.3
UPF3A-211ENST00000618700 LIMS4P0CW20 117 aa16.95■□□□□ 0.3
UPF3A-211ENST00000618700 SLC6A9P48067 706 aa16.95■□□□□ 0.3
UPF3A-211ENST00000618700 ZNF121P58317 390 aaPredicted RBP16.95■□□□□ 0.3
UPF3A-211ENST00000618700 KRTAP10-9P60411 292 aa16.95■□□□□ 0.3
UPF3A-211ENST00000618700 PPP1CBP62140 327 aa16.95■□□□□ 0.3
UPF3A-211ENST00000618700 ACTA2P62736 377 aa16.95■□□□□ 0.3
UPF3A-211ENST00000618700 ACTG2P63267 376 aa16.95■□□□□ 0.3
UPF3A-211ENST00000618700 MVKQ03426 396 aa16.95■□□□□ 0.3
UPF3A-211ENST00000618700 ADIPOQQ15848 244 aa16.95■□□□□ 0.3
UPF3A-211ENST00000618700 RBM48Q5RL73 367 aaKnown RBP16.95■□□□□ 0.3
UPF3A-211ENST00000618700 ZNF544Q6NX49 715 aa16.95■□□□□ 0.3
UPF3A-211ENST00000618700 LHFPL3Q86UP9 236 aa16.95■□□□□ 0.3
UPF3A-211ENST00000618700 ZNF540Q8NDQ6 660 aa16.95■□□□□ 0.3
UPF3A-211ENST00000618700 OR1J1Q8NGS3 322 aa16.95■□□□□ 0.3
UPF3A-211ENST00000618700 TMEM80Q96HE8 168 aa16.95■□□□□ 0.3
UPF3A-211ENST00000618700 ALG8Q9BVK2 526 aa16.95■□□□□ 0.3
UPF3A-211ENST00000618700 POFUT1Q9H488 388 aa16.95■□□□□ 0.3
UPF3A-211ENST00000618700 UBTD1Q9HAC8 227 aa16.95■□□□□ 0.3
UPF3A-211ENST00000618700 STARD10Q9Y365 291 aa16.95■□□□□ 0.3
UPF3A-211ENST00000618700 LRRC42Q9Y546 428 aa16.95■□□□□ 0.3
UPF3A-211ENST00000618700 C5orf63A6NC05 138 aa16.94■□□□□ 0.3
UPF3A-211ENST00000618700 H3BSA7 217 aa16.94■□□□□ 0.3
UPF3A-211ENST00000618700 LCATP04180 440 aa16.94■□□□□ 0.3
UPF3A-211ENST00000618700 SLC2A1P11166 492 aa16.94■□□□□ 0.3
UPF3A-211ENST00000618700 TUBG1P23258 451 aa16.94■□□□□ 0.3
UPF3A-211ENST00000618700 CRHBPP24387 322 aa16.94■□□□□ 0.3
UPF3A-211ENST00000618700 ETV1P50549 477 aa16.94■□□□□ 0.3
UPF3A-211ENST00000618700 SLC35A2P78381 396 aa16.94■□□□□ 0.3
UPF3A-211ENST00000618700 MED21Q13503 144 aa16.94■□□□□ 0.3
UPF3A-211ENST00000618700 SNAI3Q3KNW1 292 aa16.94■□□□□ 0.3
UPF3A-211ENST00000618700 RGS7BPQ6MZT1 257 aaPredicted RBP16.94■□□□□ 0.3
UPF3A-211ENST00000618700 VHLLQ6RSH7 139 aa16.94■□□□□ 0.3
UPF3A-211ENST00000618700 PLEKHG7Q6ZR37 379 aa16.94■□□□□ 0.3
UPF3A-211ENST00000618700 ZNF786Q8N393 782 aa16.94■□□□□ 0.3
UPF3A-211ENST00000618700 MARS2Q96GW9 593 aaKnown RBP16.94■□□□□ 0.3
UPF3A-211ENST00000618700 COG8Q96MW5 612 aa16.94■□□□□ 0.3
UPF3A-211ENST00000618700 SIGLEC11Q96RL6 698 aa16.94■□□□□ 0.3
UPF3A-211ENST00000618700 TUBG2Q9NRH3 451 aa16.94■□□□□ 0.3
UPF3A-211ENST00000618700 FAM206AQ9NX38 181 aa16.94■□□□□ 0.3
UPF3A-211ENST00000618700 SCN3BQ9NY72 215 aa16.94■□□□□ 0.3
UPF3A-211ENST00000618700 EXOSC1Q9Y3B2 195 aaKnown RBP16.94■□□□□ 0.3
UPF3A-211ENST00000618700 TPRKBQ9Y3C4 175 aa16.94■□□□□ 0.3
UPF3A-211ENST00000618700 CMAHPQ9Y471 501 aa16.94■□□□□ 0.3
UPF3A-211ENST00000618700 LCKP06239 509 aa16.93■□□□□ 0.3
UPF3A-211ENST00000618700 DANCRP0C864 163 aa16.93■□□□□ 0.3
UPF3A-211ENST00000618700 ZNF250P15622 560 aa16.93■□□□□ 0.3
UPF3A-211ENST00000618700 APOBEC3AP31941 199 aaPredicted RBP16.93■□□□□ 0.3
UPF3A-211ENST00000618700 MFGE8Q08431 387 aaPredicted RBP16.93■□□□□ 0.3
UPF3A-211ENST00000618700 ZNF829Q3KNS6 432 aaPredicted RBP16.93■□□□□ 0.3
UPF3A-211ENST00000618700 TP53I3Q53FA7 332 aa16.93■□□□□ 0.3
UPF3A-211ENST00000618700 SPATA46Q5T0L3 261 aa16.93■□□□□ 0.3
UPF3A-211ENST00000618700 LIPNQ5VXI9 398 aa16.93■□□□□ 0.3
UPF3A-211ENST00000618700 KCTD20Q7Z5Y7 419 aa16.93■□□□□ 0.3
UPF3A-211ENST00000618700 DTX2Q86UW9 622 aa16.93■□□□□ 0.3
UPF3A-211ENST00000618700 EGFL6Q8IUX8 553 aa16.93■□□□□ 0.3
UPF3A-211ENST00000618700 SYS1Q8N2H4 156 aa16.93■□□□□ 0.3
UPF3A-211ENST00000618700 YIPF7Q8N8F6 280 aa16.93■□□□□ 0.3
UPF3A-211ENST00000618700 SLC25A40Q8TBP6 338 aa16.93■□□□□ 0.3
UPF3A-211ENST00000618700 SGCDQ92629 289 aa16.93■□□□□ 0.3
UPF3A-211ENST00000618700 MRPL24Q96A35 216 aaKnown RBP16.93■□□□□ 0.3
UPF3A-211ENST00000618700 MRPL48Q96GC5 212 aaKnown RBP16.93■□□□□ 0.3
UPF3A-211ENST00000618700 OR2J1Q9GZK6 312 aa16.93■□□□□ 0.3
UPF3A-211ENST00000618700 DUSP21Q9H596 190 aa16.93■□□□□ 0.3
UPF3A-211ENST00000618700 ACOXLQ9NUZ1 547 aa16.93■□□□□ 0.3
UPF3A-211ENST00000618700 GNG8Q9UK08 70 aa16.93■□□□□ 0.3
UPF3A-211ENST00000618700 IGLV3-9A0A075B6K5 115 aa16.92■□□□□ 0.3
UPF3A-211ENST00000618700 ACOD1A6NK06 481 aa16.92■□□□□ 0.3
UPF3A-211ENST00000618700 PNPP00491 289 aa16.92■□□□□ 0.3
UPF3A-211ENST00000618700 CDK1P06493 297 aa16.92■□□□□ 0.3
UPF3A-211ENST00000618700 ANXA2P07355 339 aaKnown RBP16.92■□□□□ 0.3
UPF3A-211ENST00000618700 OR4A8P0C604 315 aa16.92■□□□□ 0.3
UPF3A-211ENST00000618700 C21orf33P30042 268 aaPredicted RBP16.92■□□□□ 0.3
UPF3A-211ENST00000618700 TTKP33981 857 aa16.92■□□□□ 0.3
UPF3A-211ENST00000618700 FABP6P51161 128 aa16.92■□□□□ 0.3
UPF3A-211ENST00000618700 OR12D2P58182 307 aa16.92■□□□□ 0.3
UPF3A-211ENST00000618700 MBNL2Q5VZF2 373 aaKnown RBP16.92■□□□□ 0.3
UPF3A-211ENST00000618700 FBXW12Q6X9E4 464 aa16.92■□□□□ 0.3
UPF3A-211ENST00000618700 C20orf204Q6ZNR8 217 aa16.92■□□□□ 0.3
UPF3A-211ENST00000618700 FAM57BQ71RH2 274 aa16.92■□□□□ 0.3
UPF3A-211ENST00000618700 FAM220AQ7Z4H9 259 aa16.92■□□□□ 0.3
UPF3A-211ENST00000618700 STX19Q8N4C7 294 aa16.92■□□□□ 0.3
UPF3A-211ENST00000618700 OR52H1Q8NGJ2 320 aa16.92■□□□□ 0.3
UPF3A-211ENST00000618700 OR5L1Q8NGL2 311 aa16.92■□□□□ 0.3
UPF3A-211ENST00000618700 IGFBPL1Q8WX77 278 aa16.92■□□□□ 0.3
UPF3A-211ENST00000618700 C4orf36Q96KX1 117 aa16.92■□□□□ 0.3
UPF3A-211ENST00000618700 MYCBPQ99417 103 aaPredicted RBP16.92■□□□□ 0.3
UPF3A-211ENST00000618700 MRPL37Q9BZE1 423 aaKnown RBP16.92■□□□□ 0.3
UPF3A-211ENST00000618700 MOB1AQ9H8S9 216 aa16.92■□□□□ 0.3
UPF3A-211ENST00000618700 SP140LQ9H930 580 aa16.92■□□□□ 0.3
UPF3A-211ENST00000618700 ZNF319Q9P2F9 582 aa16.92■□□□□ 0.3
UPF3A-211ENST00000618700 CLEC2DQ9UHP7 191 aa16.92■□□□□ 0.3
UPF3A-211ENST00000618700 R4GMQ9 66 aa16.92■□□□□ 0.3
UPF3A-211ENST00000618700 ITPR2Q14571 2701 aa16.92■□□□□ 0.3
UPF3A-211ENST00000618700 AKAP6Q13023 2319 aa16.91■□□□□ 0.3
UPF3A-211ENST00000618700 TMEM269A0A1B0GVZ9 245 aa16.91■□□□□ 0.3
UPF3A-211ENST00000618700 PTGES3LE9PB15 166 aa16.91■□□□□ 0.3
UPF3A-211ENST00000618700 MYL12AP19105 171 aa16.91■□□□□ 0.3
UPF3A-211ENST00000618700 SERPINF1P36955 418 aa16.91■□□□□ 0.3
UPF3A-211ENST00000618700 MPV17P39210 176 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms