RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 OR1J2Q8NGS2 313 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 LIN37Q96GY3 246 aaPredicted RBP12.67□□□□□ -0.38
CPSF1-212ENST00000616140 NRTNQ99748 197 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 SUCNR1Q9BXA5 334 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 SPACA1Q9HBV2 294 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 MN1Q10571 1320 aaPredicted RBP12.67□□□□□ -0.38
CPSF1-212ENST00000616140 TRBV5-3A0A0A0MS03 114 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 LMO7DNF2Z398 122 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 WDR1O75083 606 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 JTBO76095 146 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 ZGLP1P0C6A0 271 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 CISD3P0C7P0 127 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 OR5H8P0DN80 308 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 MYF5P13349 255 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 GABRG2P18507 467 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 RAB5CP51148 216 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 TFAP2EQ6VUC0 442 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 DND1Q8IYX4 353 aaKnown RBP12.67□□□□□ -0.38
CPSF1-212ENST00000616140 OR2A5Q96R48 311 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 OR8B4Q96RC9 309 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 CCL27Q9Y4X3 112 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 GLB1P16278 677 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 AADACP22760 399 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 TAGLN2P37802 199 aaKnown RBP12.66□□□□□ -0.38
CPSF1-212ENST00000616140 FOXF1Q12946 379 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 TCTN1Q2MV58 587 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 KCNIP4Q6PIL6 250 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 PLXDC2Q6UX71 529 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 OR8D4Q8NGM9 314 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 ARV1Q9H2C2 271 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 CACNA1EQ15878 2313 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 CDC42EP2O14613 210 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 ARPC3O15145 178 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 DFFBO76075 338 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 CDH26Q8IXH8 852 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 OR5AS1Q8N127 324 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 TP53I13Q8NBR0 393 aaPredicted RBP12.66□□□□□ -0.38
CPSF1-212ENST00000616140 OR52H1Q8NGJ2 320 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 OTOSQ8NHW6 89 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 RAB39BQ96DA2 213 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 THOC3Q96J01 351 aaKnown RBP12.66□□□□□ -0.38
CPSF1-212ENST00000616140 GDF2Q9UK05 429 aaPredicted RBP12.66□□□□□ -0.38
CPSF1-212ENST00000616140 ADAMTS7Q9UKP4 1686 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 OR6C76A6NM76 312 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 ZNF732B4DXR9 585 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 PLPP2O43688 288 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 NME2P1O60361 137 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 H2AFB1P0C5Y9 115 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 FCGR2CP31995 323 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 MAGEB1P43366 347 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 RRADP55042 308 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 UBE2IP63279 158 aaKnown RBP12.66□□□□□ -0.38
CPSF1-212ENST00000616140 RNF4P78317 190 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 CLN3Q13286 438 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 SHBQ15464 509 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 VN1R4Q7Z5H5 301 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 C17orf47Q8NEP4 570 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 MRGPRX4Q96LA9 322 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 NKX6-2Q9C056 277 aaPredicted RBP12.66□□□□□ -0.38
CPSF1-212ENST00000616140 SIRT3Q9NTG7 399 aaPredicted RBP12.66□□□□□ -0.38
CPSF1-212ENST00000616140 NEU3Q9UQ49 428 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 TUBGCP6Q96RT7 1819 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 SERTM1A2A2V5 107 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 DEGS1O15121 323 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 YKT6O15498 198 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 ZBTB37Q5TC79 503 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 TMEM178AQ8NBL3 297 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 OR4S1Q8NGB4 309 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 OR10J5Q8NHC4 309 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 NUDT9Q9BW91 350 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 TIMM10BQ9Y5J6 103 aa12.66□□□□□ -0.38
CPSF1-212ENST00000616140 OR6C68A6NDL8 312 aa12.65□□□□□ -0.38
CPSF1-212ENST00000616140 ADRB1P08588 477 aa12.65□□□□□ -0.38
CPSF1-212ENST00000616140 C8orf82Q6P1X6 216 aaPredicted RBP12.65□□□□□ -0.38
CPSF1-212ENST00000616140 BORCS7Q96B45 105 aa12.65□□□□□ -0.38
CPSF1-212ENST00000616140 OXGR1Q96P68 337 aa12.65□□□□□ -0.38
CPSF1-212ENST00000616140 UBL7Q96S82 380 aaPredicted RBP12.65□□□□□ -0.38
CPSF1-212ENST00000616140 PCDHB10Q9UN67 800 aa12.65□□□□□ -0.38
CPSF1-212ENST00000616140 IGHV3-15A0A0B4J1V0 119 aa12.65□□□□□ -0.38
CPSF1-212ENST00000616140 DHHO43323 396 aa12.65□□□□□ -0.38
CPSF1-212ENST00000616140 GSTP1P09211 210 aaKnown RBP12.65□□□□□ -0.38
CPSF1-212ENST00000616140 MGMTP16455 207 aa12.65□□□□□ -0.38
CPSF1-212ENST00000616140 PTAFRP25105 342 aa12.65□□□□□ -0.38
CPSF1-212ENST00000616140 DUSP1P28562 367 aa12.65□□□□□ -0.38
CPSF1-212ENST00000616140 DRD3P35462 400 aa12.65□□□□□ -0.38
CPSF1-212ENST00000616140 RAB11AP62491 216 aa12.65□□□□□ -0.38
CPSF1-212ENST00000616140 ADIRFQ15847 76 aa12.65□□□□□ -0.38
CPSF1-212ENST00000616140 OR1S2Q8NGQ3 325 aa12.65□□□□□ -0.38
CPSF1-212ENST00000616140 OR4A16Q8NH70 328 aa12.65□□□□□ -0.38
CPSF1-212ENST00000616140 HPSE2Q8WWQ2 592 aa12.65□□□□□ -0.38
CPSF1-212ENST00000616140 LRRC61Q9BV99 259 aa12.65□□□□□ -0.38
CPSF1-212ENST00000616140 C1QTNF6Q9BXI9 259 aa12.65□□□□□ -0.38
CPSF1-212ENST00000616140 MRPS2Q9Y399 296 aaKnown RBP12.65□□□□□ -0.38
CPSF1-212ENST00000616140 PRELID3BQ9Y3B1 194 aa12.65□□□□□ -0.38
CPSF1-212ENST00000616140 KPTNQ9Y664 436 aa12.65□□□□□ -0.38
CPSF1-212ENST00000616140 A0A096LPE4 126 aa12.65□□□□□ -0.38
CPSF1-212ENST00000616140 A0A1W2PPZ6 126 aa12.65□□□□□ -0.38
CPSF1-212ENST00000616140 NRASP01111 189 aa12.65□□□□□ -0.38
CPSF1-212ENST00000616140 SRFP11831 508 aa12.65□□□□□ -0.38
CPSF1-212ENST00000616140 RPL12P30050 165 aaKnown RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms