RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	SLC18B1	Q6NT16	456 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	SPIC	Q8N5J4	248 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	ZNF433	Q8N7K0	673 aa	Predicted RBP	10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	OR6X1	Q8NH79	312 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	RNF128	Q8TEB7	428 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	GIMAP1	Q8WWP7	306 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	PHF21A	Q96BD5	680 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	SLC25A44	Q96H78	314 aa	Predicted RBP	10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	ZNF845	Q96IR2	970 aa	Predicted RBP	10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	TSSK2	Q96PF2	358 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	KCNK17	Q96T54	332 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	SRA1	Q9HD15	236 aa	Known RBP	10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	HRASLS	Q9HDD0	168 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	SLCO1C1	Q9NYB5	712 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	SPRR3	Q9UBC9	169 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	TUBD1	Q9UJT1	453 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	KLHDC2	Q9Y2U9	406 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	HSPB11	Q9Y547	144 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	CACNA1G	O43497	2377 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	ANXA2P2	A6NMY6	339 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	SNRPGP15	A8MWD9	76 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	AQP7	O14520	342 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	IGHG1	P01857	330 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	ANXA2	P07355	339 aa	Known RBP	10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	ADRA2C	P18825	462 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	C4BPB	P20851	252 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	CLDN17	P56750	224 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	ZBTB37	Q5TC79	503 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	ANKRD16	Q6P6B7	361 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	DPY19L4	Q7Z388	723 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	PIAS4	Q8N2W9	510 aa	Predicted RBP	10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	ZNF676	Q8N7Q3	588 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	OR52I2	Q8NH67	350 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	ZNF431	Q8TF32	576 aa	Predicted RBP	10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	ROBO4	Q8WZ75	1007 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	PNPLA2	Q96AD5	504 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	WDYHV1	Q96HA8	205 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	RBP7	Q96R05	134 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	EMC6	Q9BV81	110 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	MRPL13	Q9BYD1	178 aa	Known RBP	10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	PLSCR2	Q9NRY7	297 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	B3GNT2	Q9NY97	397 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	IKZF2	Q9UKS7	526 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	MCTS1	Q9ULC4	181 aa	Known RBP	10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	B9D1	Q9UPM9	204 aa		10.34	□□□□□ -0.75
VRK3-223	ENST00000601341	CHD8	Q9HCK8	2581 aa		10.33	□□□□□ -0.76
VRK3-223	ENST00000601341	SLC16A7	O60669	478 aa		10.33	□□□□□ -0.76
VRK3-223	ENST00000601341	CYTIP	O60759	359 aa		10.33	□□□□□ -0.76
VRK3-223	ENST00000601341	RPP14	O95059	124 aa	Known RBP	10.33	□□□□□ -0.76
VRK3-223	ENST00000601341	FAM87A	P0C7U9	286 aa		10.33	□□□□□ -0.76
VRK3-223	ENST00000601341	FST	P19883	344 aa		10.33	□□□□□ -0.76
VRK3-223	ENST00000601341	C6orf183	Q5T699	404 aa		10.33	□□□□□ -0.76
VRK3-223	ENST00000601341	ABLIM2	Q6H8Q1	611 aa		10.33	□□□□□ -0.76
VRK3-223	ENST00000601341	DNM1P34	Q6PK57	102 aa		10.33	□□□□□ -0.76
VRK3-223	ENST00000601341	DEGS2	Q6QHC5	323 aa		10.33	□□□□□ -0.76
VRK3-223	ENST00000601341	ASB13	Q8WXK3	278 aa		10.33	□□□□□ -0.76
VRK3-223	ENST00000601341	TMEM106A	Q96A25	262 aa		10.33	□□□□□ -0.76
VRK3-223	ENST00000601341	PRRG4	Q9BZD6	226 aa		10.33	□□□□□ -0.76
VRK3-223	ENST00000601341	SLC25A18	Q9H1K4	315 aa		10.33	□□□□□ -0.76
VRK3-223	ENST00000601341	AUNIP	Q9H7T9	357 aa		10.33	□□□□□ -0.76
VRK3-223	ENST00000601341	NPDC1	Q9NQX5	325 aa	Predicted RBP	10.33	□□□□□ -0.76
VRK3-223	ENST00000601341	ZNF71	Q9NQZ8	489 aa	Predicted RBP	10.33	□□□□□ -0.76
VRK3-223	ENST00000601341	CLEC4A	Q9UMR7	237 aa		10.33	□□□□□ -0.76
VRK3-223	ENST00000601341	RCE1	Q9Y256	329 aa		10.33	□□□□□ -0.76
VRK3-223	ENST00000601341	TNRC6A	Q8NDV7	1962 aa	Known RBP	10.32	□□□□□ -0.76
VRK3-223	ENST00000601341		A0A0A6YYH2	397 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	IGLV1-36	A0A0B4J1U3	117 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	MEGF11	A6BM72	1044 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341		A6NJ64	397 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	ZNF716	A6NP11	495 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	FAM171A2	A8MVW0	826 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341		H7C417	338 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	MT-ND4	P03905	459 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	TPO	P07202	933 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	PGA4	P0DJD7	388 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	PGA3	P0DJD8	388 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	NR2C1	P13056	603 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	CDK2	P24941	298 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	CCR6	P51684	374 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	CLRN1	P58418	232 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	GLO1	Q04760	184 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	CAMK2D	Q13557	499 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	PCK2	Q16822	640 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	ST3GAL2	Q16842	350 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	LINC00303	Q3SY05	128 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	THEM4	Q5T1C6	240 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	PRSS45	Q7RTY3	260 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	DTX3	Q8N9I9	347 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	THEM6	Q8WUY1	208 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	MARVELD3	Q96A59	401 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	SARAF	Q96BY9	339 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	ZNF385A	Q96PM9	386 aa	Known RBP	10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	PRDM14	Q9GZV8	571 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	GPN1	Q9HCN4	374 aa	Predicted RBP	10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	MTFP1	Q9UDX5	166 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	ZNF107	Q9UII5	783 aa	Predicted RBP	10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	ZNF222	Q9UK12	451 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	ELF5	Q9UKW6	265 aa	Predicted RBP	10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	MGAT4A	Q9UM21	535 aa		10.32	□□□□□ -0.76
VRK3-223	ENST00000601341	FLVCR1	Q9Y5Y0	555 aa		10.32	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms