RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	ZNF684	Q5T5D7	378 aa		10.99	□□□□□ -0.65
UPF1-208	ENST00000600012	GPR107	Q5VW38	600 aa		10.99	□□□□□ -0.65
UPF1-208	ENST00000600012	FOXB2	Q5VYV0	432 aa		10.99	□□□□□ -0.65
UPF1-208	ENST00000600012	DNM1P46	Q6ZS02	220 aa		10.99	□□□□□ -0.65
UPF1-208	ENST00000600012		Q6ZT83	130 aa		10.99	□□□□□ -0.65
UPF1-208	ENST00000600012	VASH1	Q7L8A9	365 aa	Predicted RBP	10.99	□□□□□ -0.65
UPF1-208	ENST00000600012	CLVS1	Q8IUQ0	354 aa	Predicted RBP	10.99	□□□□□ -0.65
UPF1-208	ENST00000600012	SYS1	Q8N2H4	156 aa		10.99	□□□□□ -0.65
UPF1-208	ENST00000600012	SLC22A24	Q8N4F4	322 aa		10.99	□□□□□ -0.65
UPF1-208	ENST00000600012	YIPF7	Q8N8F6	280 aa		10.99	□□□□□ -0.65
UPF1-208	ENST00000600012	OR10S1	Q8NGN2	331 aa		10.99	□□□□□ -0.65
UPF1-208	ENST00000600012	OR2AJ1	Q8NGZ0	328 aa		10.99	□□□□□ -0.65
UPF1-208	ENST00000600012	ASB17	Q8WXJ9	295 aa		10.99	□□□□□ -0.65
UPF1-208	ENST00000600012	YIPF6	Q96EC8	236 aa		10.99	□□□□□ -0.65
UPF1-208	ENST00000600012	PELI1	Q96FA3	418 aa		10.99	□□□□□ -0.65
UPF1-208	ENST00000600012	MRPL48	Q96GC5	212 aa	Known RBP	10.99	□□□□□ -0.65
UPF1-208	ENST00000600012	OR8B4	Q96RC9	309 aa		10.99	□□□□□ -0.65
UPF1-208	ENST00000600012	NAA50	Q9GZZ1	169 aa	Known RBP	10.99	□□□□□ -0.65
UPF1-208	ENST00000600012	RBM38	Q9H0Z9	239 aa	Known RBP	10.99	□□□□□ -0.65
UPF1-208	ENST00000600012	FAIM	Q9NVQ4	179 aa		10.99	□□□□□ -0.65
UPF1-208	ENST00000600012	FBN1	P35555	2871 aa	Known RBP	10.99	□□□□□ -0.65
UPF1-208	ENST00000600012		A0A096LPE4	126 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012		A0A1W2PPZ6	126 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	DPRX	A6NFQ7	191 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	CCDC160	A6NGH7	325 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012		H3BSA7	217 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	RER1	O15258	196 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	RPP14	O95059	124 aa	Known RBP	10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	PATE4	P0C8F1	98 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	CD36	P16671	472 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	EGR3	Q06889	387 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	AQP6	Q13520	282 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	PPA1	Q15181	289 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	STK11	Q15831	433 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	FAM27B	Q5VT28	67 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	LIPK	Q5VXJ0	399 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	OR7E24	Q6IFN5	339 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	KCTD18	Q6PI47	426 aa	Predicted RBP	10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	ABHD12B	Q7Z5M8	362 aa	Predicted RBP	10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	KRT77	Q7Z794	578 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	DTX2	Q86UW9	622 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	SKA3	Q8IX90	412 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	UFD1	Q92890	307 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	MUCL1	Q96DR8	90 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	SLAMF6	Q96DU3	332 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	FBXO17	Q96EF6	278 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	TRAF4	Q9BUZ4	470 aa	Predicted RBP	10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	FUNDC2	Q9BWH2	189 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	C1orf198	Q9H425	327 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	SIAE	Q9HAT2	523 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	ISYNA1	Q9NPH2	558 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	TRIM36	Q9NQ86	728 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	YAE1D1	Q9NRH1	226 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	CENPM	Q9NSP4	180 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	BABAM2	Q9NXR7	383 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	CISD1	Q9NZ45	108 aa	Known RBP	10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	LRP12	Q9Y561	859 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	CEPT1	Q9Y6K0	416 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	MXRA5	Q9NR99	2828 aa		10.98	□□□□□ -0.65
UPF1-208	ENST00000600012	RNF212B	A8MTL3	300 aa		10.97	□□□□□ -0.65
UPF1-208	ENST00000600012	CCRL2	O00421	344 aa		10.97	□□□□□ -0.65
UPF1-208	ENST00000600012	NDUFS7	O75251	213 aa		10.97	□□□□□ -0.65
UPF1-208	ENST00000600012	LYZL6	O75951	148 aa		10.97	□□□□□ -0.65
UPF1-208	ENST00000600012	FARS2	O95363	451 aa	Known RBP	10.97	□□□□□ -0.65
UPF1-208	ENST00000600012	CST2	P09228	141 aa		10.97	□□□□□ -0.65
UPF1-208	ENST00000600012	ZNF32	P17041	273 aa		10.97	□□□□□ -0.65
UPF1-208	ENST00000600012	NR4A1	P22736	598 aa		10.97	□□□□□ -0.65
UPF1-208	ENST00000600012	IGHV1-2	P23083	117 aa		10.97	□□□□□ -0.65
UPF1-208	ENST00000600012	GADD45A	P24522	165 aa		10.97	□□□□□ -0.65
UPF1-208	ENST00000600012	MPG	P29372	298 aa		10.97	□□□□□ -0.65
UPF1-208	ENST00000600012	TTK	P33981	857 aa		10.97	□□□□□ -0.65
UPF1-208	ENST00000600012	RGS6	P49758	472 aa		10.97	□□□□□ -0.65
UPF1-208	ENST00000600012	GBX2	P52951	348 aa	Predicted RBP	10.97	□□□□□ -0.65
UPF1-208	ENST00000600012	ACSM1	Q08AH1	577 aa		10.97	□□□□□ -0.65
UPF1-208	ENST00000600012	TIMM23B	Q5SRD1	257 aa		10.97	□□□□□ -0.65
UPF1-208	ENST00000600012	LIPN	Q5VXI9	398 aa		10.97	□□□□□ -0.65
UPF1-208	ENST00000600012	SLC16A14	Q7RTX9	510 aa		10.97	□□□□□ -0.65
UPF1-208	ENST00000600012	P2RY8	Q86VZ1	359 aa		10.97	□□□□□ -0.65
UPF1-208	ENST00000600012	ZNF679	Q8IYX0	411 aa		10.97	□□□□□ -0.65
UPF1-208	ENST00000600012	OR1K1	Q8NGR3	316 aa		10.97	□□□□□ -0.65
UPF1-208	ENST00000600012	FGFBP3	Q8TAT2	258 aa		10.97	□□□□□ -0.65
UPF1-208	ENST00000600012	RNF133	Q8WVZ7	376 aa		10.97	□□□□□ -0.65
UPF1-208	ENST00000600012	ELOVL3	Q9HB03	270 aa		10.97	□□□□□ -0.65
UPF1-208	ENST00000600012	PNRC2	Q9NPJ4	139 aa	Known RBP	10.97	□□□□□ -0.65
UPF1-208	ENST00000600012	FBXL3	Q9UKT7	428 aa		10.97	□□□□□ -0.65
UPF1-208	ENST00000600012	SIRT4	Q9Y6E7	314 aa	Predicted RBP	10.97	□□□□□ -0.65
UPF1-208	ENST00000600012	YLPM1	P49750	1951 aa	Known RBP	10.97	□□□□□ -0.65
UPF1-208	ENST00000600012	HEATR1	Q9H583	2144 aa	Known RBP	10.97	□□□□□ -0.65
UPF1-208	ENST00000600012	SMIM31	A0A1B0GVY4	71 aa		10.96	□□□□□ -0.65
UPF1-208	ENST00000600012	SHISA9	B4DS77	424 aa		10.96	□□□□□ -0.65
UPF1-208	ENST00000600012	ZNF878	C9JN71	531 aa		10.96	□□□□□ -0.65
UPF1-208	ENST00000600012	RAD51D	O75771	328 aa		10.96	□□□□□ -0.65
UPF1-208	ENST00000600012	SULT1C4	O75897	302 aa		10.96	□□□□□ -0.65
UPF1-208	ENST00000600012	CD8A	P01732	235 aa		10.96	□□□□□ -0.65
UPF1-208	ENST00000600012	H2BFM	P0C1H6	154 aa		10.96	□□□□□ -0.65
UPF1-208	ENST00000600012	CPE	P16870	476 aa		10.96	□□□□□ -0.65
UPF1-208	ENST00000600012	CEL	P19835	753 aa		10.96	□□□□□ -0.65
UPF1-208	ENST00000600012	COX5A	P20674	150 aa		10.96	□□□□□ -0.65
UPF1-208	ENST00000600012	OPRL1	P41146	370 aa		10.96	□□□□□ -0.65
UPF1-208	ENST00000600012	RIDA	P52758	137 aa	Known RBP	10.96	□□□□□ -0.65

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