RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 LAMP5Q9UJQ1 280 aa9.05□□□□□ -0.96
LIG1-210ENST00000596332 RAB26Q9ULW5 256 aa9.05□□□□□ -0.96
LIG1-210ENST00000596332 FZR1Q9UM11 496 aa9.05□□□□□ -0.96
LIG1-210ENST00000596332 PLEKHA6Q9Y2H5 1048 aa9.05□□□□□ -0.96
LIG1-210ENST00000596332 AKAP9Q99996 3911 aa9.05□□□□□ -0.96
LIG1-210ENST00000596332 NAV2Q8IVL1 2488 aa9.05□□□□□ -0.96
LIG1-210ENST00000596332 OTOGQ6ZRI0 2925 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 E9PI62 339 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 J3QW42 95 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 FAM20BO75063 409 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 RAD52P43351 418 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 EVX1P49640 407 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 ETV1P50549 477 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 MMP15P51511 669 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 TPTEP56180 551 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 PRSS12P56730 875 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 OR12D2P58182 307 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 ZNF121P58317 390 aaPredicted RBP9.04□□□□□ -0.96
LIG1-210ENST00000596332 GRB2P62993 217 aaKnown RBP9.04□□□□□ -0.96
LIG1-210ENST00000596332 ZNF92Q03936 586 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 EGR3Q06889 387 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 GALEQ14376 348 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 GK2Q14410 553 aaPredicted RBP9.04□□□□□ -0.96
LIG1-210ENST00000596332 SPRNQ5BIV9 151 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 GLYATL3Q5SZD4 288 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 DRAM2Q6UX65 266 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 C20orf204Q6ZNR8 217 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 PLEKHG7Q6ZR37 379 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 Q6ZSR3 168 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 LHFPL3Q86UP9 236 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 ZCCHC24Q8N2G6 241 aaKnown RBP9.04□□□□□ -0.96
LIG1-210ENST00000596332 IPCEF1Q8WWN9 437 aaPredicted RBP9.04□□□□□ -0.96
LIG1-210ENST00000596332 RORBQ92753 470 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 CMBLQ96DG6 245 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 ZNF184Q99676 751 aaPredicted RBP9.04□□□□□ -0.96
LIG1-210ENST00000596332 COPS4Q9BT78 406 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 REPIN1Q9BWE0 567 aaKnown RBP9.04□□□□□ -0.96
LIG1-210ENST00000596332 BCL2L14Q9BZR8 327 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 VCXQ9H320 206 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 DUSP21Q9H596 190 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 CBLN4Q9NTU7 201 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 ERVK13-1Q9NX77 482 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 CLEC2DQ9UHP7 191 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 POU2F3Q9UKI9 436 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 LAMP3Q9UQV4 416 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 RPL36Q9Y3U8 105 aaKnown RBP9.04□□□□□ -0.96
LIG1-210ENST00000596332 CMAHPQ9Y471 501 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 TMEM14AQ9Y6G1 99 aa9.04□□□□□ -0.96
LIG1-210ENST00000596332 A0A1B0GTI1 187 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 METTL15A6NJ78 407 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 B9A039 149 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 ZNF670-ZNF695F2Z2N8 137 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 ZNF254O75437 659 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 RAF1P04049 648 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 LCATP04180 440 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 LCKP06239 509 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 HTR1AP08908 422 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 H2BFMP0C1H6 154 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 PIPP12273 146 aaPredicted RBP9.03□□□□□ -0.96
LIG1-210ENST00000596332 KITLGP21583 273 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 C21orf33P30042 268 aaPredicted RBP9.03□□□□□ -0.96
LIG1-210ENST00000596332 CX3CR1P49238 355 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 RGS6P49758 472 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 MMP16P51512 607 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 NANOS3P60323 173 aaKnown RBP9.03□□□□□ -0.96
LIG1-210ENST00000596332 SLC35A2P78381 396 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 SNCBQ16143 134 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 TP53I3Q53FA7 332 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 KLHL22Q53GT1 634 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 LIPNQ5VXI9 398 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 RGS7BPQ6MZT1 257 aaPredicted RBP9.03□□□□□ -0.96
LIG1-210ENST00000596332 KRT74Q7RTS7 529 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 KRT77Q7Z794 578 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 PRSS35Q8N3Z0 413 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 ACBD7Q8N6N7 88 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 OR10H4Q8NGA5 316 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 OR8B12Q8NGG6 310 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 OR2AE1Q8NHA4 323 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 SPTSSAQ969W0 71 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 APOBEC3DQ96AK3 386 aaPredicted RBP9.03□□□□□ -0.96
LIG1-210ENST00000596332 MBD6Q96DN6 1003 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 PELI1Q96FA3 418 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 SYT3Q9BQG1 590 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 VCX3BQ9H321 246 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 PPP1R3EQ9H7J1 279 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 PTTG3PQ9NZH4 202 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 EIF3KQ9UBQ5 218 aaKnown RBP9.03□□□□□ -0.96
LIG1-210ENST00000596332 DIMT1Q9UNQ2 313 aaKnown RBP9.03□□□□□ -0.96
LIG1-210ENST00000596332 LRRC42Q9Y546 428 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 VPS13CQ709C8 3753 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 ARFGEF3Q5TH69 2177 aa9.03□□□□□ -0.96
LIG1-210ENST00000596332 H3BSA7 217 aa9.02□□□□□ -0.97
LIG1-210ENST00000596332 SLC1A7O00341 560 aa9.02□□□□□ -0.97
LIG1-210ENST00000596332 SULT1C4O75897 302 aa9.02□□□□□ -0.97
LIG1-210ENST00000596332 LALBAP00709 142 aa9.02□□□□□ -0.97
LIG1-210ENST00000596332 TTRP02766 147 aa9.02□□□□□ -0.97
LIG1-210ENST00000596332 RAC2P15153 192 aa9.02□□□□□ -0.97
LIG1-210ENST00000596332 TUBG1P23258 451 aa9.02□□□□□ -0.97
LIG1-210ENST00000596332 CRHBPP24387 322 aa9.02□□□□□ -0.97
LIG1-210ENST00000596332 RBMXP38159 391 aaKnown RBP9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms