RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 OR2T2Q6IF00 324 aa13.74□□□□□ -0.21
TRIM28-206ENST00000595974 DRAM2Q6UX65 266 aa13.74□□□□□ -0.21
TRIM28-206ENST00000595974 ASRGL1Q7L266 308 aa13.74□□□□□ -0.21
TRIM28-206ENST00000595974 ERI1Q8IV48 349 aaKnown RBP13.74□□□□□ -0.21
TRIM28-206ENST00000595974 OR5AS1Q8N127 324 aa13.74□□□□□ -0.21
TRIM28-206ENST00000595974 OR8G5Q8NG78 346 aa13.74□□□□□ -0.21
TRIM28-206ENST00000595974 OR2Z1Q8NG97 314 aa13.74□□□□□ -0.21
TRIM28-206ENST00000595974 OR6N2Q8NGY6 317 aa13.74□□□□□ -0.21
TRIM28-206ENST00000595974 ST7LQ8TDW4 575 aa13.74□□□□□ -0.21
TRIM28-206ENST00000595974 RAB1CQ92928 201 aa13.74□□□□□ -0.21
TRIM28-206ENST00000595974 SLAMF6Q96DU3 332 aa13.74□□□□□ -0.21
TRIM28-206ENST00000595974 PLEKHA8Q96JA3 519 aa13.74□□□□□ -0.21
TRIM28-206ENST00000595974 ZNF582Q96NG8 517 aaPredicted RBP13.74□□□□□ -0.21
TRIM28-206ENST00000595974 NARFLQ9H6Q4 476 aa13.74□□□□□ -0.21
TRIM28-206ENST00000595974 IL19Q9UHD0 177 aa13.74□□□□□ -0.21
TRIM28-206ENST00000595974 WIPI2Q9Y4P8 454 aa13.74□□□□□ -0.21
TRIM28-206ENST00000595974 GRB2P62993 217 aaKnown RBP13.73□□□□□ -0.21
TRIM28-206ENST00000595974 GK2Q14410 553 aaPredicted RBP13.73□□□□□ -0.21
TRIM28-206ENST00000595974 AVPI1Q5T686 147 aa13.73□□□□□ -0.21
TRIM28-206ENST00000595974 PLBD1Q6P4A8 553 aa13.73□□□□□ -0.21
TRIM28-206ENST00000595974 CCDC121Q6ZUS5 278 aa13.73□□□□□ -0.21
TRIM28-206ENST00000595974 SHFQ7M4L6 423 aa13.73□□□□□ -0.21
TRIM28-206ENST00000595974 PRIMA1Q86XR5 153 aa13.73□□□□□ -0.21
TRIM28-206ENST00000595974 OR13G1Q8NGZ3 307 aa13.73□□□□□ -0.21
TRIM28-206ENST00000595974 CCL17Q92583 94 aa13.73□□□□□ -0.21
TRIM28-206ENST00000595974 KCNJ15Q99712 375 aa13.73□□□□□ -0.21
TRIM28-206ENST00000595974 PRRG3Q9BZD7 231 aa13.73□□□□□ -0.21
TRIM28-206ENST00000595974 SHARPINQ9H0F6 387 aa13.73□□□□□ -0.21
TRIM28-206ENST00000595974 GABARAPL1Q9H0R8 117 aa13.73□□□□□ -0.21
TRIM28-206ENST00000595974 OR51V1Q9H2C8 321 aa13.73□□□□□ -0.21
TRIM28-206ENST00000595974 B4DSR2 109 aa13.72□□□□□ -0.21
TRIM28-206ENST00000595974 WNT9BO14905 357 aa13.72□□□□□ -0.21
TRIM28-206ENST00000595974 HNF1AP20823 631 aa13.72□□□□□ -0.21
TRIM28-206ENST00000595974 SLC15A1P46059 708 aa13.72□□□□□ -0.21
TRIM28-206ENST00000595974 DAPP51397 102 aa13.72□□□□□ -0.21
TRIM28-206ENST00000595974 CRISP1P54107 249 aa13.72□□□□□ -0.21
TRIM28-206ENST00000595974 LMO4P61968 165 aa13.72□□□□□ -0.21
TRIM28-206ENST00000595974 ESRRGP62508 458 aa13.72□□□□□ -0.21
TRIM28-206ENST00000595974 MVKQ03426 396 aa13.72□□□□□ -0.21
TRIM28-206ENST00000595974 EIF2B1Q14232 305 aaKnown RBP13.72□□□□□ -0.21
TRIM28-206ENST00000595974 TAF13Q15543 124 aa13.72□□□□□ -0.21
TRIM28-206ENST00000595974 SLC35D3Q5M8T2 416 aa13.72□□□□□ -0.21
TRIM28-206ENST00000595974 PGAP1Q75T13 922 aa13.72□□□□□ -0.21
TRIM28-206ENST00000595974 RHOUQ7L0Q8 258 aa13.72□□□□□ -0.21
TRIM28-206ENST00000595974 MRPL21Q7Z2W9 205 aaKnown RBP13.72□□□□□ -0.21
TRIM28-206ENST00000595974 DPY19L4Q7Z388 723 aa13.72□□□□□ -0.21
TRIM28-206ENST00000595974 PEG10Q86TG7 708 aaKnown RBP13.72□□□□□ -0.21
TRIM28-206ENST00000595974 NAA40Q86UY6 237 aa13.72□□□□□ -0.21
TRIM28-206ENST00000595974 ZDHHC13Q8IUH4 622 aa13.72□□□□□ -0.21
TRIM28-206ENST00000595974 TIGD4Q8IY51 512 aa13.72□□□□□ -0.21
TRIM28-206ENST00000595974 BHLHE23Q8NDY6 225 aa13.72□□□□□ -0.21
TRIM28-206ENST00000595974 ITLN1Q8WWA0 313 aa13.72□□□□□ -0.21
TRIM28-206ENST00000595974 RAB39BQ96DA2 213 aa13.72□□□□□ -0.21
TRIM28-206ENST00000595974 OR2V2Q96R30 315 aa13.72□□□□□ -0.21
TRIM28-206ENST00000595974 SLC30A2Q9BRI3 323 aa13.72□□□□□ -0.21
TRIM28-206ENST00000595974 TOR3AQ9H497 397 aa13.72□□□□□ -0.21
TRIM28-206ENST00000595974 KRT84Q9NSB2 600 aa13.72□□□□□ -0.21
TRIM28-206ENST00000595974 CENPMQ9NSP4 180 aa13.72□□□□□ -0.21
TRIM28-206ENST00000595974 A0A1B0GWJ7 208 aa13.71□□□□□ -0.21
TRIM28-206ENST00000595974 G3V2T6 193 aa13.71□□□□□ -0.21
TRIM28-206ENST00000595974 FAM157CP0CG43 387 aa13.71□□□□□ -0.21
TRIM28-206ENST00000595974 PCMT1P22061 227 aa13.71□□□□□ -0.21
TRIM28-206ENST00000595974 PRKXP51817 358 aa13.71□□□□□ -0.21
TRIM28-206ENST00000595974 DVL1P1P54792 670 aaPredicted RBP13.71□□□□□ -0.21
TRIM28-206ENST00000595974 SNAI3Q3KNW1 292 aa13.71□□□□□ -0.21
TRIM28-206ENST00000595974 KLHL12Q53G59 568 aa13.71□□□□□ -0.21
TRIM28-206ENST00000595974 SPRNQ5BIV9 151 aa13.71□□□□□ -0.21
TRIM28-206ENST00000595974 TMEM236Q5W0B7 351 aa13.71□□□□□ -0.21
TRIM28-206ENST00000595974 CXXC5Q7LFL8 322 aaKnown RBP13.71□□□□□ -0.21
TRIM28-206ENST00000595974 CPOQ8IVL8 374 aa13.71□□□□□ -0.21
TRIM28-206ENST00000595974 ZNF283Q8N7M2 679 aa13.71□□□□□ -0.21
TRIM28-206ENST00000595974 OR10AD1Q8NGE0 317 aa13.71□□□□□ -0.21
TRIM28-206ENST00000595974 RNF133Q8WVZ7 376 aa13.71□□□□□ -0.21
TRIM28-206ENST00000595974 ZMYND19Q96E35 227 aaPredicted RBP13.71□□□□□ -0.21
TRIM28-206ENST00000595974 ABHD6Q9BV23 337 aa13.71□□□□□ -0.21
TRIM28-206ENST00000595974 BEX2Q9BXY8 128 aa13.71□□□□□ -0.21
TRIM28-206ENST00000595974 OPA3Q9H6K4 179 aa13.71□□□□□ -0.21
TRIM28-206ENST00000595974 ZNF665Q9H7R5 613 aa13.71□□□□□ -0.21
TRIM28-206ENST00000595974 TREM2Q9NZC2 230 aa13.71□□□□□ -0.21
TRIM28-206ENST00000595974 ENOPH1Q9UHY7 261 aa13.71□□□□□ -0.21
TRIM28-206ENST00000595974 PPP1R3CQ9UQK1 317 aa13.71□□□□□ -0.21
TRIM28-206ENST00000595974 NOP16Q9Y3C1 178 aaKnown RBP13.71□□□□□ -0.21
TRIM28-206ENST00000595974 ATRQ13535 2644 aa13.7□□□□□ -0.22
TRIM28-206ENST00000595974 IFNL4K9M1U5 179 aa13.7□□□□□ -0.22
TRIM28-206ENST00000595974 APOC1P02654 83 aa13.7□□□□□ -0.22
TRIM28-206ENST00000595974 MSMBP08118 114 aa13.7□□□□□ -0.22
TRIM28-206ENST00000595974 SLC2A5P22732 501 aa13.7□□□□□ -0.22
TRIM28-206ENST00000595974 HSD11B1P28845 292 aa13.7□□□□□ -0.22
TRIM28-206ENST00000595974 SRP9P49458 86 aaKnown RBP13.7□□□□□ -0.22
TRIM28-206ENST00000595974 SNAPC1Q16533 368 aa13.7□□□□□ -0.22
TRIM28-206ENST00000595974 FAM120AOSQ5T036 256 aa13.7□□□□□ -0.22
TRIM28-206ENST00000595974 KDM4DQ6B0I6 523 aa13.7□□□□□ -0.22
TRIM28-206ENST00000595974 AMIGO2Q86SJ2 522 aa13.7□□□□□ -0.22
TRIM28-206ENST00000595974 GLCCI1Q86VQ1 547 aa13.7□□□□□ -0.22
TRIM28-206ENST00000595974 ZNF454Q8N9F8 522 aa13.7□□□□□ -0.22
TRIM28-206ENST00000595974 OR51F2Q8NH61 342 aa13.7□□□□□ -0.22
TRIM28-206ENST00000595974 OTOSQ8NHW6 89 aa13.7□□□□□ -0.22
TRIM28-206ENST00000595974 LRTOMTQ8WZ04 291 aa13.7□□□□□ -0.22
TRIM28-206ENST00000595974 TMEM106BQ9NUM4 274 aa13.7□□□□□ -0.22
TRIM28-206ENST00000595974 TMEM100Q9NV29 134 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms