RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 DVL1P1P54792 670 aaPredicted RBP12.78□□□□□ -0.36
TRIM28-205ENST00000595028 TPTEP56180 551 aa12.78□□□□□ -0.36
TRIM28-205ENST00000595028 GINS1Q14691 196 aa12.78□□□□□ -0.36
TRIM28-205ENST00000595028 CR1LQ2VPA4 569 aa12.78□□□□□ -0.36
TRIM28-205ENST00000595028 TEX30Q5JUR7 227 aa12.78□□□□□ -0.36
TRIM28-205ENST00000595028 IL17RELQ6ZVW7 336 aa12.78□□□□□ -0.36
TRIM28-205ENST00000595028 ATG16L2Q8NAA4 619 aa12.78□□□□□ -0.36
TRIM28-205ENST00000595028 OR8G5Q8NG78 346 aa12.78□□□□□ -0.36
TRIM28-205ENST00000595028 ST7LQ8TDW4 575 aa12.78□□□□□ -0.36
TRIM28-205ENST00000595028 RAB1CQ92928 201 aa12.78□□□□□ -0.36
TRIM28-205ENST00000595028 COPS4Q9BT78 406 aa12.78□□□□□ -0.36
TRIM28-205ENST00000595028 NTN4Q9HB63 628 aa12.78□□□□□ -0.36
TRIM28-205ENST00000595028 WNK2Q9Y3S1 2297 aa12.78□□□□□ -0.36
TRIM28-205ENST00000595028 SURF4O15260 269 aa12.77□□□□□ -0.37
TRIM28-205ENST00000595028 SELEP16581 610 aa12.77□□□□□ -0.37
TRIM28-205ENST00000595028 TNFRSF1AP19438 455 aa12.77□□□□□ -0.37
TRIM28-205ENST00000595028 PAICSP22234 425 aaKnown RBP12.77□□□□□ -0.37
TRIM28-205ENST00000595028 PRKACGP22612 351 aa12.77□□□□□ -0.37
TRIM28-205ENST00000595028 SLC6A9P48067 706 aa12.77□□□□□ -0.37
TRIM28-205ENST00000595028 MALLQ13021 153 aa12.77□□□□□ -0.37
TRIM28-205ENST00000595028 GK2Q14410 553 aaPredicted RBP12.77□□□□□ -0.37
TRIM28-205ENST00000595028 ACSM5Q6NUN0 579 aa12.77□□□□□ -0.37
TRIM28-205ENST00000595028 GLCCI1Q86VQ1 547 aa12.77□□□□□ -0.37
TRIM28-205ENST00000595028 ZNF283Q8N7M2 679 aa12.77□□□□□ -0.37
TRIM28-205ENST00000595028 OR10AD1Q8NGE0 317 aa12.77□□□□□ -0.37
TRIM28-205ENST00000595028 ITLN1Q8WWA0 313 aa12.77□□□□□ -0.37
TRIM28-205ENST00000595028 DNAJC9Q8WXX5 260 aa12.77□□□□□ -0.37
TRIM28-205ENST00000595028 UTP4Q969X6 686 aaKnown RBP12.77□□□□□ -0.37
TRIM28-205ENST00000595028 RAB39BQ96DA2 213 aa12.77□□□□□ -0.37
TRIM28-205ENST00000595028 SLAMF6Q96DU3 332 aa12.77□□□□□ -0.37
TRIM28-205ENST00000595028 NRBF2Q96F24 287 aa12.77□□□□□ -0.37
TRIM28-205ENST00000595028 ZNF582Q96NG8 517 aaPredicted RBP12.77□□□□□ -0.37
TRIM28-205ENST00000595028 OR2V2Q96R30 315 aa12.77□□□□□ -0.37
TRIM28-205ENST00000595028 INTS14Q96SY0 518 aa12.77□□□□□ -0.37
TRIM28-205ENST00000595028 SLC30A2Q9BRI3 323 aa12.77□□□□□ -0.37
TRIM28-205ENST00000595028 MMADHCQ9H3L0 296 aaPredicted RBP12.77□□□□□ -0.37
TRIM28-205ENST00000595028 ZNF665Q9H7R5 613 aa12.77□□□□□ -0.37
TRIM28-205ENST00000595028 SLC25A19Q9HC21 320 aa12.77□□□□□ -0.37
TRIM28-205ENST00000595028 TMEM106BQ9NUM4 274 aa12.77□□□□□ -0.37
TRIM28-205ENST00000595028 DCAF16Q9NXF7 216 aa12.77□□□□□ -0.37
TRIM28-205ENST00000595028 KIF17Q9P2E2 1029 aa12.77□□□□□ -0.37
TRIM28-205ENST00000595028 IL19Q9UHD0 177 aa12.77□□□□□ -0.37
TRIM28-205ENST00000595028 ZNF878C9JN71 531 aa12.76□□□□□ -0.37
TRIM28-205ENST00000595028 ZNF593O00488 134 aaPredicted RBP12.76□□□□□ -0.37
TRIM28-205ENST00000595028 GLCEO94923 617 aa12.76□□□□□ -0.37
TRIM28-205ENST00000595028 IGHV2-5P01817 119 aa12.76□□□□□ -0.37
TRIM28-205ENST00000595028 MSMBP08118 114 aa12.76□□□□□ -0.37
TRIM28-205ENST00000595028 SRD5A1P18405 259 aa12.76□□□□□ -0.37
TRIM28-205ENST00000595028 PCMT1P22061 227 aa12.76□□□□□ -0.37
TRIM28-205ENST00000595028 ANOS1P23352 680 aa12.76□□□□□ -0.37
TRIM28-205ENST00000595028 PRSS12P56730 875 aa12.76□□□□□ -0.37
TRIM28-205ENST00000595028 HNRNPA0Q13151 305 aaKnown RBP12.76□□□□□ -0.37
TRIM28-205ENST00000595028 ATP6AP1Q15904 470 aa12.76□□□□□ -0.37
TRIM28-205ENST00000595028 C1orf146Q5VVC0 180 aa12.76□□□□□ -0.37
TRIM28-205ENST00000595028 FAHD1Q6P587 224 aa12.76□□□□□ -0.37
TRIM28-205ENST00000595028 DRAM2Q6UX65 266 aa12.76□□□□□ -0.37
TRIM28-205ENST00000595028 NAA40Q86UY6 237 aa12.76□□□□□ -0.37
TRIM28-205ENST00000595028 ERI1Q8IV48 349 aaKnown RBP12.76□□□□□ -0.37
TRIM28-205ENST00000595028 BHLHE23Q8NDY6 225 aa12.76□□□□□ -0.37
TRIM28-205ENST00000595028 OR6N2Q8NGY6 317 aa12.76□□□□□ -0.37
TRIM28-205ENST00000595028 OR13G1Q8NGZ3 307 aa12.76□□□□□ -0.37
TRIM28-205ENST00000595028 OR51F2Q8NH61 342 aa12.76□□□□□ -0.37
TRIM28-205ENST00000595028 TMEM186Q96B77 213 aa12.76□□□□□ -0.37
TRIM28-205ENST00000595028 OTULINQ96BN8 352 aa12.76□□□□□ -0.37
TRIM28-205ENST00000595028 MARCH7Q9H992 704 aa12.76□□□□□ -0.37
TRIM28-205ENST00000595028 LPAR2Q9HBW0 351 aa12.76□□□□□ -0.37
TRIM28-205ENST00000595028 A0A1B0GWJ7 208 aa12.75□□□□□ -0.37
TRIM28-205ENST00000595028 ISPDA4D126 451 aa12.75□□□□□ -0.37
TRIM28-205ENST00000595028 PRR23D1E9PI22 279 aaPredicted RBP12.75□□□□□ -0.37
TRIM28-205ENST00000595028 MLNRO43193 412 aa12.75□□□□□ -0.37
TRIM28-205ENST00000595028 PRODHO43272 600 aa12.75□□□□□ -0.37
TRIM28-205ENST00000595028 HMGN1P05114 100 aa12.75□□□□□ -0.37
TRIM28-205ENST00000595028 PRR23D2P0DMB1 279 aaPredicted RBP12.75□□□□□ -0.37
TRIM28-205ENST00000595028 GSTT1P30711 240 aa12.75□□□□□ -0.37
TRIM28-205ENST00000595028 MMP16P51512 607 aa12.75□□□□□ -0.37
TRIM28-205ENST00000595028 PRKXP51817 358 aa12.75□□□□□ -0.37
TRIM28-205ENST00000595028 CDK5Q00535 292 aa12.75□□□□□ -0.37
TRIM28-205ENST00000595028 EIF2B1Q14232 305 aaKnown RBP12.75□□□□□ -0.37
TRIM28-205ENST00000595028 TAF13Q15543 124 aa12.75□□□□□ -0.37
TRIM28-205ENST00000595028 SNAI3Q3KNW1 292 aa12.75□□□□□ -0.37
TRIM28-205ENST00000595028 PLBD1Q6P4A8 553 aa12.75□□□□□ -0.37
TRIM28-205ENST00000595028 PGAP1Q75T13 922 aa12.75□□□□□ -0.37
TRIM28-205ENST00000595028 MRPL21Q7Z2W9 205 aaKnown RBP12.75□□□□□ -0.37
TRIM28-205ENST00000595028 DPY19L4Q7Z388 723 aa12.75□□□□□ -0.37
TRIM28-205ENST00000595028 PEG10Q86TG7 708 aaKnown RBP12.75□□□□□ -0.37
TRIM28-205ENST00000595028 TIGD4Q8IY51 512 aa12.75□□□□□ -0.37
TRIM28-205ENST00000595028 PARP8Q8N3A8 854 aa12.75□□□□□ -0.37
TRIM28-205ENST00000595028 MEGF10Q96KG7 1140 aa12.75□□□□□ -0.37
TRIM28-205ENST00000595028 SIGLEC11Q96RL6 698 aa12.75□□□□□ -0.37
TRIM28-205ENST00000595028 KCNJ15Q99712 375 aa12.75□□□□□ -0.37
TRIM28-205ENST00000595028 GAL3ST1Q99999 423 aa12.75□□□□□ -0.37
TRIM28-205ENST00000595028 OR51V1Q9H2C8 321 aa12.75□□□□□ -0.37
TRIM28-205ENST00000595028 PAPOLBQ9NRJ5 636 aaKnown RBP12.75□□□□□ -0.37
TRIM28-205ENST00000595028 CENPMQ9NSP4 180 aa12.75□□□□□ -0.37
TRIM28-205ENST00000595028 TMEFF2Q9UIK5 374 aaPredicted RBP12.75□□□□□ -0.37
TRIM28-205ENST00000595028 PPP1R3CQ9UQK1 317 aa12.75□□□□□ -0.37
TRIM28-205ENST00000595028 NPTNQ9Y639 398 aa12.75□□□□□ -0.37
TRIM28-205ENST00000595028 TRAV20A0A0B4J274 112 aa12.74□□□□□ -0.37
TRIM28-205ENST00000595028 H0YL77 283 aa12.74□□□□□ -0.37
TRIM28-205ENST00000595028 IGHV2-70P01814 119 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms