RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	REP15	Q6BDI9	236 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	SLC25A25	Q6KCM7	469 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	FAM183BP	Q6ZVS7	135 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	SSX9	Q7RTT3	188 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	SCD5	Q86SK9	330 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	SMIM29	Q86T20	159 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	ZNF557	Q8N988	423 aa	Predicted RBP	3.99	□□□□□ -1.77
SS18-223	ENST00000583595	FBXO36	Q8NEA4	188 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	ZNF555	Q8NEP9	628 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	NUP37	Q8NFH4	326 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	ZNF519	Q8TB69	540 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	GPX8	Q8TED1	209 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	ZNF431	Q8TF32	576 aa	Predicted RBP	3.99	□□□□□ -1.77
SS18-223	ENST00000583595	SFT2D1	Q8WV19	159 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	CXorf40B	Q96DE9	158 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	AURKB	Q96GD4	344 aa	Predicted RBP	3.99	□□□□□ -1.77
SS18-223	ENST00000583595	GMPPA	Q96IJ6	420 aa	Predicted RBP	3.99	□□□□□ -1.77
SS18-223	ENST00000583595	LINC00052	Q96N35	136 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	CLCC1	Q96S66	551 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	ZNF670	Q9BS34	389 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	REG4	Q9BYZ8	158 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	C20orf27	Q9GZN8	174 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	SLITRK2	Q9H156	845 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	WDR13	Q9H1Z4	485 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	ZNF385D	Q9H6B1	395 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	LYRM4	Q9HD34	91 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	MRPS30	Q9NP92	439 aa	Known RBP	3.99	□□□□□ -1.77
SS18-223	ENST00000583595	C19orf12	Q9NSK7	152 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	CUTC	Q9NTM9	273 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	FAM49B	Q9NUQ9	324 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	SDHAF2	Q9NX18	166 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	MTCH1	Q9NZJ7	389 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	CD300A	Q9UGN4	299 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	SLC2A6	Q9UGQ3	507 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	BTNL2	Q9UIR0	455 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	KCNG2	Q9UJ96	466 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	MGAT4A	Q9UM21	535 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	ROBO3	Q96MS0	1386 aa		3.99	□□□□□ -1.77
SS18-223	ENST00000583595	TANC1	Q9C0D5	1861 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	TCRBV9S1A1T	A0A576	114 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	DHRS12	A0PJE2	317 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	VSTM2B	A6NLU5	285 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595		A8MXK9	166 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595		B4DXG7	233 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595		E9PAM4	449 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	PRR23D1	E9PI22	279 aa	Predicted RBP	3.98	□□□□□ -1.77
SS18-223	ENST00000583595	BLOC1S5-TXNDC5	H3BN57	136 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	PHYH	O14832	338 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	MYL12B	O14950	172 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	LMX1B	O60663	402 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	LYPLA1	O75608	230 aa	Predicted RBP	3.98	□□□□□ -1.77
SS18-223	ENST00000583595	EIF3G	O75821	320 aa	Known RBP eCLIP	3.98	□□□□□ -1.77
SS18-223	ENST00000583595	SRP72	O76094	671 aa	Known RBP	3.98	□□□□□ -1.77
SS18-223	ENST00000583595	CLIC3	O95833	236 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	IFNG	P01579	166 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	IGHV3-9	P01782	118 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	IGHG4	P01861	327 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	HTR1A	P08908	422 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	ACSM4	P0C7M7	580 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	PRR23D2	P0DMB1	279 aa	Predicted RBP	3.98	□□□□□ -1.77
SS18-223	ENST00000583595	COX5B	P10606	129 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	MYL12A	P19105	171 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	OTX1	P32242	354 aa	Predicted RBP	3.98	□□□□□ -1.77
SS18-223	ENST00000583595	TIMP3	P35625	211 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	KPNA2	P52292	529 aa	Known RBP	3.98	□□□□□ -1.77
SS18-223	ENST00000583595	NDUFV3	P56181	108 aa	Known RBP	3.98	□□□□□ -1.77
SS18-223	ENST00000583595	NCS1	P62166	190 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	RAB11A	P62491	216 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	PSPH	P78330	225 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	ZNF33A	Q06730	810 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	ZNF146	Q15072	292 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	RAB11B	Q15907	218 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	CYP51A1	Q16850	503 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	MS4A18	Q3C1V0	323 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	VPS26B	Q4G0F5	336 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	ZNF585B	Q52M93	769 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	LY6G6F	Q5SQ64	297 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	LCN8	Q6JVE9	175 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	FAM45BP	Q6NSW5	357 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	FAM199X	Q6PEV8	388 aa	Predicted RBP	3.98	□□□□□ -1.77
SS18-223	ENST00000583595	SCARA5	Q6ZMJ2	495 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	PGAP1	Q75T13	922 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	ASCL5	Q7RTU5	278 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	HSD17B13	Q7Z5P4	300 aa	Predicted RBP	3.98	□□□□□ -1.77
SS18-223	ENST00000583595	CEACAM19	Q7Z692	300 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	TAC4	Q86UU9	113 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	CDKL3	Q8IVW4	592 aa	Predicted RBP	3.98	□□□□□ -1.77
SS18-223	ENST00000583595	SVOPL	Q8N434	492 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	RFLNB	Q8N5W9	214 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	WDSUB1	Q8N9V3	476 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	FAM45A	Q8TCE6	357 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	MRGPRD	Q8TDS7	321 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	CANT1	Q8WVQ1	401 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	NTAN1	Q96AB6	310 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	EXOSC8	Q96B26	276 aa	Known RBP	3.98	□□□□□ -1.77
SS18-223	ENST00000583595	C19orf60	Q96EN9	201 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	WBP1	Q96G27	269 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	CELF6	Q96J87	481 aa	Known RBP	3.98	□□□□□ -1.77
SS18-223	ENST00000583595	TRNT1	Q96Q11	434 aa	Known RBP	3.98	□□□□□ -1.77
SS18-223	ENST00000583595	CYP2S1	Q96SQ9	504 aa		3.98	□□□□□ -1.77

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