RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 MTFP1Q9UDX5 166 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 HMCN1Q96RW7 5635 aa2.27□□□□□ -2.05
SMCHD1-209ENST00000583441 FHOD3Q2V2M9 1422 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 TRAV19A0A0A6YYK7 116 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 ZNF705GA8MUZ8 300 aaPredicted RBP2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 TEX46H3BTG2 121 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 NVLO15381 856 aaKnown RBP2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 RBFOX2O43251 390 aaKnown RBP eCLIP2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 WISP3O95389 354 aaPredicted RBP2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 GLAP06280 429 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 KRT16P08779 473 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 TACSTD2P09758 323 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 OR56A5P0C7T3 313 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 C1GALT1C1LP0DN25 315 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 MSR1P21757 451 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 HTR1DP28221 377 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 RBM34P42696 430 aaKnown RBP2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 SLC11A1P49279 550 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 FABP6P51161 128 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 CDKN2DP55273 166 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 DAOAP59103 153 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 RPS23P62266 143 aaKnown RBP2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 TFDP2Q14188 446 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 Q5W150 140 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 ADNP2Q6IQ32 1131 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 NTM-AS1Q6ZSK4 140 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 WDR86Q86TI4 376 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 ZNF547Q8IVP9 402 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 CDKL3Q8IVW4 592 aaPredicted RBP2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 MYOCDQ8IZQ8 938 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 UBAC2Q8NBM4 344 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 PROKR2Q8NFJ6 384 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 ITFG1Q8TB96 612 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 SYNPRQ8TBG9 265 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 CSPG4P5Q96PW8 444 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 RNF157Q96PX1 679 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 TOLLIPQ9H0E2 274 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 C1orf198Q9H425 327 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 NECAP2Q9NVZ3 263 aa2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 YARS2Q9Y2Z4 477 aaKnown RBP2.26□□□□□ -2.05
SMCHD1-209ENST00000583441 PTPRTO14522 1441 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 ARHGAP21Q5T5U3 1957 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 IGHV1-69DA0A0B4J2H0 117 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 PLPP1O14494 284 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 TAAR5O14804 337 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 CHST10O43529 356 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 CHMP2AO43633 222 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 GCM2O75603 506 aaPredicted RBP2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 FARS2O95363 451 aaKnown RBP2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 APCSP02743 223 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 MRPL3P09001 348 aaKnown RBP2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 RHOXF2BP0C7M4 288 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 PRKACAP17612 351 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 USF1P22415 310 aaPredicted RBP2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 TALDO1P37837 337 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 GPR1P46091 355 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 UBE2MP61081 183 aaKnown RBP2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 IRF8Q02556 426 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 EIF4EBP1Q13541 118 aaPredicted RBP2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 DOC2AQ14183 400 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 RCAN2Q14206 197 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 RPEL1Q2QD12 228 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 AP1ARQ63HQ0 302 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 ULK3Q6PHR2 472 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 C12orf54Q6X4T0 127 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 FAM122BQ7Z309 247 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 UNC93AQ86WB7 457 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 NKAIN4Q8IVV8 208 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 C11orf72Q8NBR9 251 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 OR8U1Q8NH10 309 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 FRZBQ92765 325 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 NAT6Q93015 286 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 FLYWCH2Q96CP2 140 aaKnown RBP2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 SPIN2AQ99865 258 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 SPIN2BQ9BPZ2 258 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 DEFB129Q9H1M3 183 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 RGCCQ9H4X1 137 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 TMEM27Q9HBJ8 222 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 CD209Q9NNX6 404 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 RPRD1BQ9NQG5 326 aaKnown RBP2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 CYTL1Q9NRR1 136 aa2.25□□□□□ -2.05
SMCHD1-209ENST00000583441 IGSF9BQ9UPX0 1349 aa2.24□□□□□ -2.05
SMCHD1-209ENST00000583441 A0A0J9YXV3 536 aa2.24□□□□□ -2.05
SMCHD1-209ENST00000583441 ANKRD65E5RJM6 399 aa2.24□□□□□ -2.05
SMCHD1-209ENST00000583441 H0YC42 278 aa2.24□□□□□ -2.05
SMCHD1-209ENST00000583441 GABRPO00591 440 aa2.24□□□□□ -2.05
SMCHD1-209ENST00000583441 NME4O00746 187 aa2.24□□□□□ -2.05
SMCHD1-209ENST00000583441 SOCS1O15524 211 aa2.24□□□□□ -2.05
SMCHD1-209ENST00000583441 ERI3O43414 337 aaKnown RBP2.24□□□□□ -2.05
SMCHD1-209ENST00000583441 AKR7A2O43488 359 aa2.24□□□□□ -2.05
SMCHD1-209ENST00000583441 RAD1O60671 282 aa2.24□□□□□ -2.05
SMCHD1-209ENST00000583441 REM1O75628 298 aa2.24□□□□□ -2.05
SMCHD1-209ENST00000583441 DCNP07585 359 aaKnown RBP2.24□□□□□ -2.05
SMCHD1-209ENST00000583441 ZNF688P0C7X2 276 aa2.24□□□□□ -2.05
SMCHD1-209ENST00000583441 PEX19P40855 299 aa2.24□□□□□ -2.05
SMCHD1-209ENST00000583441 NBL1P41271 181 aa2.24□□□□□ -2.05
SMCHD1-209ENST00000583441 PPICP45877 212 aa2.24□□□□□ -2.05
SMCHD1-209ENST00000583441 RAB7AP51149 207 aa2.24□□□□□ -2.05
SMCHD1-209ENST00000583441 RPS15AP62244 130 aaKnown RBP2.24□□□□□ -2.05
SMCHD1-209ENST00000583441 YWHAEP62258 255 aaKnown RBP2.24□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms