RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 ZNF770Q6IQ21 691 aaPredicted RBP17.19■□□□□ 0.34
SHMT1-209ENST00000582653 LYPD4Q6UWN0 246 aa17.19■□□□□ 0.34
SHMT1-209ENST00000582653 OR52L1Q8NGH7 329 aa17.19■□□□□ 0.34
SHMT1-209ENST00000582653 OR51L1Q8NGJ5 315 aa17.19■□□□□ 0.34
SHMT1-209ENST00000582653 C22orf15Q8WYQ4 148 aa17.19■□□□□ 0.34
SHMT1-209ENST00000582653 ESM1Q9NQ30 184 aa17.19■□□□□ 0.34
SHMT1-209ENST00000582653 WNK2Q9Y3S1 2297 aa17.18■□□□□ 0.34
SHMT1-209ENST00000582653 IFNL4K9M1U5 179 aa17.18■□□□□ 0.34
SHMT1-209ENST00000582653 LCATP04180 440 aa17.18■□□□□ 0.34
SHMT1-209ENST00000582653 PSKH1P11801 424 aa17.18■□□□□ 0.34
SHMT1-209ENST00000582653 SELEP16581 610 aa17.18■□□□□ 0.34
SHMT1-209ENST00000582653 CPT2P23786 658 aa17.18■□□□□ 0.34
SHMT1-209ENST00000582653 MAGEA2P43356 314 aa17.18■□□□□ 0.34
SHMT1-209ENST00000582653 MNAT1P51948 309 aa17.18■□□□□ 0.34
SHMT1-209ENST00000582653 MS4A2Q01362 244 aa17.18■□□□□ 0.34
SHMT1-209ENST00000582653 ECH1Q13011 328 aa17.18■□□□□ 0.34
SHMT1-209ENST00000582653 ZNF154Q13106 437 aa17.18■□□□□ 0.34
SHMT1-209ENST00000582653 GK2Q14410 553 aaPredicted RBP17.18■□□□□ 0.34
SHMT1-209ENST00000582653 PROKR2Q8NFJ6 384 aa17.18■□□□□ 0.34
SHMT1-209ENST00000582653 OR10S1Q8NGN2 331 aa17.18■□□□□ 0.34
SHMT1-209ENST00000582653 SLCO4A1Q96BD0 722 aa17.18■□□□□ 0.34
SHMT1-209ENST00000582653 NSL1Q96IY1 281 aa17.18■□□□□ 0.34
SHMT1-209ENST00000582653 CCT8L2Q96SF2 557 aa17.18■□□□□ 0.34
SHMT1-209ENST00000582653 HCAR1Q9BXC0 346 aa17.18■□□□□ 0.34
SHMT1-209ENST00000582653 TRIM15Q9C019 465 aa17.18■□□□□ 0.34
SHMT1-209ENST00000582653 DDX28Q9NUL7 540 aaKnown RBP17.18■□□□□ 0.34
SHMT1-209ENST00000582653 TMEM100Q9NV29 134 aa17.18■□□□□ 0.34
SHMT1-209ENST00000582653 VNN3Q9NY84 501 aa17.18■□□□□ 0.34
SHMT1-209ENST00000582653 IL20Q9NYY1 176 aa17.18■□□□□ 0.34
SHMT1-209ENST00000582653 INSIG2Q9Y5U4 225 aa17.18■□□□□ 0.34
SHMT1-209ENST00000582653 AUP1Q9Y679 476 aa17.18■□□□□ 0.34
SHMT1-209ENST00000582653 A8MXK9 166 aa17.17■□□□□ 0.34
SHMT1-209ENST00000582653 F5H0A9 414 aaPredicted RBP17.17■□□□□ 0.34
SHMT1-209ENST00000582653 CCNB2O95067 398 aa17.17■□□□□ 0.34
SHMT1-209ENST00000582653 ZNF823P16415 610 aa17.17■□□□□ 0.34
SHMT1-209ENST00000582653 ZNF12P17014 697 aa17.17■□□□□ 0.34
SHMT1-209ENST00000582653 ANOS1P23352 680 aa17.17■□□□□ 0.34
SHMT1-209ENST00000582653 MDH2P40926 338 aaKnown RBP17.17■□□□□ 0.34
SHMT1-209ENST00000582653 PMELP40967 661 aa17.17■□□□□ 0.34
SHMT1-209ENST00000582653 SRP9P49458 86 aaKnown RBP17.17■□□□□ 0.34
SHMT1-209ENST00000582653 RASSF6Q6ZTQ3 369 aa17.17■□□□□ 0.34
SHMT1-209ENST00000582653 MOGAT3Q86VF5 341 aa17.17■□□□□ 0.34
SHMT1-209ENST00000582653 MUC20Q8N307 709 aaPredicted RBP17.17■□□□□ 0.34
SHMT1-209ENST00000582653 AQP11Q8NBQ7 271 aa17.17■□□□□ 0.34
SHMT1-209ENST00000582653 SLC37A3Q8NCC5 494 aa17.17■□□□□ 0.34
SHMT1-209ENST00000582653 OR9Q1Q8NGQ5 310 aa17.17■□□□□ 0.34
SHMT1-209ENST00000582653 ZMYND19Q96E35 227 aaPredicted RBP17.17■□□□□ 0.34
SHMT1-209ENST00000582653 NUP50Q9UKX7 468 aa17.17■□□□□ 0.34
SHMT1-209ENST00000582653 U3KQV3 271 aa17.17■□□□□ 0.34
SHMT1-209ENST00000582653 CEACAM18A8MTB9 384 aa17.16■□□□□ 0.34
SHMT1-209ENST00000582653 WNT2P09544 360 aa17.16■□□□□ 0.34
SHMT1-209ENST00000582653 TPTEP56180 551 aa17.16■□□□□ 0.34
SHMT1-209ENST00000582653 UBA52P62987 128 aaKnown RBP17.16■□□□□ 0.34
SHMT1-209ENST00000582653 FAM201AQ5SY85 155 aa17.16■□□□□ 0.34
SHMT1-209ENST00000582653 RPL13AP3Q6NVV1 102 aa17.16■□□□□ 0.34
SHMT1-209ENST00000582653 DHFR2Q86XF0 187 aa17.16■□□□□ 0.34
SHMT1-209ENST00000582653 LINC00471Q8N535 108 aa17.16■□□□□ 0.34
SHMT1-209ENST00000582653 TSSK6Q9BXA6 273 aa17.16■□□□□ 0.34
SHMT1-209ENST00000582653 TMEM165Q9HC07 324 aa17.16■□□□□ 0.34
SHMT1-209ENST00000582653 TBC1D23Q9NUY8 699 aa17.16■□□□□ 0.34
SHMT1-209ENST00000582653 C5orf63A6NC05 138 aa17.15■□□□□ 0.34
SHMT1-209ENST00000582653 SOX14O95416 240 aa17.15■□□□□ 0.34
SHMT1-209ENST00000582653 GYPBP06028 91 aa17.15■□□□□ 0.34
SHMT1-209ENST00000582653 PAX8Q06710 450 aa17.15■□□□□ 0.34
SHMT1-209ENST00000582653 MALLQ13021 153 aa17.15■□□□□ 0.34
SHMT1-209ENST00000582653 CRMP1Q14194 572 aa17.15■□□□□ 0.34
SHMT1-209ENST00000582653 SNAI3Q3KNW1 292 aa17.15■□□□□ 0.34
SHMT1-209ENST00000582653 ESCO2Q56NI9 601 aa17.15■□□□□ 0.34
SHMT1-209ENST00000582653 LCN8Q6JVE9 175 aa17.15■□□□□ 0.34
SHMT1-209ENST00000582653 RBMS3Q6XE24 437 aaKnown RBP17.15■□□□□ 0.34
SHMT1-209ENST00000582653 PGAP1Q75T13 922 aa17.15■□□□□ 0.34
SHMT1-209ENST00000582653 OR2T4Q8NH00 348 aa17.15■□□□□ 0.34
SHMT1-209ENST00000582653 OR4Q3Q8NH05 313 aa17.15■□□□□ 0.34
SHMT1-209ENST00000582653 SGMS2Q8NHU3 365 aa17.15■□□□□ 0.34
SHMT1-209ENST00000582653 KCNG2Q9UJ96 466 aa17.15■□□□□ 0.34
SHMT1-209ENST00000582653 A0A1B0GWJ7 208 aa17.14■□□□□ 0.33
SHMT1-209ENST00000582653 M0R135 149 aa17.14■□□□□ 0.33
SHMT1-209ENST00000582653 FSTL3O95633 263 aa17.14■□□□□ 0.33
SHMT1-209ENST00000582653 T-ENOLP0DO92 83 aa17.14■□□□□ 0.33
SHMT1-209ENST00000582653 EGR1P18146 543 aa17.14■□□□□ 0.33
SHMT1-209ENST00000582653 MAB21L1Q13394 359 aa17.14■□□□□ 0.33
SHMT1-209ENST00000582653 TRIM25Q14258 630 aaKnown RBP17.14■□□□□ 0.33
SHMT1-209ENST00000582653 MICAQ29983 383 aa17.14■□□□□ 0.33
SHMT1-209ENST00000582653 ZNF181Q2M3W8 571 aa17.14■□□□□ 0.33
SHMT1-209ENST00000582653 ARMCX4Q5H9R4 360 aa17.14■□□□□ 0.33
SHMT1-209ENST00000582653 KLF17Q5JT82 389 aaPredicted RBP17.14■□□□□ 0.33
SHMT1-209ENST00000582653 DOK3Q7L591 496 aa17.14■□□□□ 0.33
SHMT1-209ENST00000582653 DCXRQ7Z4W1 244 aa17.14■□□□□ 0.33
SHMT1-209ENST00000582653 LNX2Q8N448 690 aa17.14■□□□□ 0.33
SHMT1-209ENST00000582653 SIGLECL1Q8N7X8 197 aa17.14■□□□□ 0.33
SHMT1-209ENST00000582653 ZNF511Q8NB15 262 aa17.14■□□□□ 0.33
SHMT1-209ENST00000582653 ZNF799Q96GE5 643 aa17.14■□□□□ 0.33
SHMT1-209ENST00000582653 MRI1Q9BV20 369 aa17.14■□□□□ 0.33
SHMT1-209ENST00000582653 MAGIXQ9H6Y5 334 aa17.14■□□□□ 0.33
SHMT1-209ENST00000582653 ARMC1Q9NVT9 282 aa17.14■□□□□ 0.33
SHMT1-209ENST00000582653 ZNF69Q9UC07 566 aa17.14■□□□□ 0.33
SHMT1-209ENST00000582653 SAMHD1Q9Y3Z3 626 aaKnown RBP17.14■□□□□ 0.33
SHMT1-209ENST00000582653 PPIAL4AQ9Y536 164 aa17.14■□□□□ 0.33
SHMT1-209ENST00000582653 SPARCP09486 303 aa17.13■□□□□ 0.33
SHMT1-209ENST00000582653 CLUP10909 449 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms